0
votes
1
reply
85
views
0
votes
0
replies
173
views
9 months ago
nancy
•
0
0
votes
4
replies
404
views
Recent ...
Replies
Comment: Multi-factor paired RNAseq differential analysis with DEseq2
by
swbarnes2
▴
970
You can have as many columns as you like in coldata, only those specified in the design will be used when you do the DESeq command
So sur…
Comment: Multi-factor paired RNAseq differential analysis with DEseq2
by
Matthew
•
0
Thanks for the suggestion, I'll give that a try! Based on the PCA, all three factors do tend to influence the results, so I'll try the colu…
Comment: fgsea not downloading due to new r version. Is there a way around this?
by
amir.khan
•
0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2
by
Michael Love
35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2
by
swbarnes2
▴
970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Votes
Awards
• All
Teacher to
Peter Langfelder
★
2.6k
Popular Question to
Robert Castelo
★
2.8k
Scholar to
Hervé Pagès
15k
Locations
• All
Netherlands, 22 minutes ago
Hong Kong, 1 hour ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Seattle, WA, United States, 2 hours ago
Netherlands, 22 minutes ago
Hong Kong, 1 hour ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Seattle, WA, United States, 2 hours ago
Traffic: 193 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6