Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rna
•
reset
6
votes
5
replies
2.6k
views
Clustering differential expression results from voomWithQualityWeights
RNA
limma
rsem
edgeR
updated 5.3 years ago by
Gordon Smyth
46k • written 5.3 years ago by
hrishi27n
▴ 20
5
votes
4
replies
845
views
Experiment design contrasts any time edgeR
DGE
rnaseq
RNA
edger
updated 5.3 years ago by
londonflavido
• 0 • written 5.3 years ago by
Pietro
▴ 30
5
votes
5
replies
677
views
Association analysis between gene expression and Phenotype
rna
singlecell
limma
updated 3.4 years ago by
Aaron Lun
★ 27k • written 3.4 years ago by
hrishi27n
▴ 20
4
votes
3
replies
723
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation
rna
updated 22 months ago by
James W. MacDonald
60k • written 22 months ago by
anthony.nash
▴ 20
3
votes
6
replies
1.3k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA
rna-seq
science
bioinformatics
updated 5.3 years ago by
James W. MacDonald
60k • written 5.3 years ago by
hrishi27n
▴ 20
3
votes
1
reply
1.2k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR
deseq2
RNA
differential expression
updated 5.9 years ago by
Aaron Lun
★ 27k • written 5.9 years ago by
tyssowski
• 0
2
votes
3
replies
628
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq
rna
updated 3.4 years ago by
Steve Lianoglou
13k • written 3.4 years ago by
Anthony Nash
▴ 20
2
votes
1
reply
141
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 8 weeks ago by
Gordon Smyth
46k • written 8 weeks ago by
Mikołaj Mierzejewski
• 0
2
votes
1
reply
371
views
DESeq2 statistic and design
deseq2
RNA
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
Merlin
▴ 10
2
votes
7
replies
512
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 2.2 years ago by
James W. MacDonald
60k • written 2.2 years ago by
Marco_aurelio
• 0
1
vote
2
replies
241
views
Is it necessary to standardize Combat in R?
RNA
Combat
sva
R
12 weeks ago • updated 11 weeks ago
takemoto
• 0
1
vote
1
reply
290
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2
RNA
updated 2.3 years ago by
Michael Love
37k • written 2.3 years ago by
agsousa
• 0
1
vote
1
reply
768
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 5.2 years ago by
chris86
▴ 400 • written 5.2 years ago by
bhgyu
▴ 30
1
vote
1
reply
542
views
how to filter genes in significant module?
RNA
WGCNA
filter
3.1 years ago
modarzi
▴ 10
1
vote
0
replies
529
views
Job:
1 Computational Biologist and 1 Molecular Biologist
computational biology
molecular biology
RNA
r-loop
ncRNA
Job
3.8 years ago
l.brown
▴ 10
1
vote
1
reply
184
views
Description of the headers obtained from the Eligos2 output
methylation
RNA
native
epitranscriptomics
updated 5 months ago by
tcalvo
▴ 70 • written 5 months ago by
megha.hs28
▴ 10
0
votes
1
reply
247
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 7 months ago by
ATpoint
★ 1.4k • written 7 months ago by
st3472
• 0
0
votes
4
replies
4.2k
views
RNAseq Adjusting for Covariates?
RNA
rnaseq
Covariate
adjustment
deseq
updated 6.5 years ago by
Michael Love
37k • written 6.5 years ago by
sjs0282
• 0
0
votes
0
replies
924
views
Finding candidate binding sites for RNA binding proteins in R
R
bioconductor
RNA
mRNA
RNA binding proteins
5.4 years ago
Walter F. Baumann
▴ 10
0
votes
1
reply
1.0k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2
RNA
rnaseq
updated 5.0 years ago by
Michael Love
37k • written 5.1 years ago by
hrishi27n
▴ 20
0
votes
1
reply
593
views
Time series comparison with DESEQ2
RNA
rnaseq
deseq2
updated 5.0 years ago by
Michael Love
37k • written 5.0 years ago by
hrishi27n
▴ 20
0
votes
0
replies
509
views
R code for finding wobble/redundant positions in an RNA string
r
code
rna
wobble
4.5 years ago
fawazfebin
▴ 50
0
votes
2
replies
476
views
DESeq and checkFullRank(modelMatrix)
RNA
DESeq2
updated 3.3 years ago by
Michael Love
37k • written 3.3 years ago by
Merlin
▴ 10
0
votes
0
replies
421
views
Job:
Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell
RNA
Data analysis
Bioinformatics
Job
3.1 years ago
jmaanaki
• 0
0
votes
6
replies
439
views
Bizarre Dispersion Plots
deseq2
RNA
RNASeq
updated 2.5 years ago by
Michael Love
37k • written 2.5 years ago by
stephen.hartley
• 0
0
votes
3
replies
659
views
Pearson correlation between gene expression and phenotype
edgeR
RNASeq
updated 21 months ago by
Gordon Smyth
46k • written 21 months ago by
weichengz
• 0
0
votes
1
reply
91
views
Rsubread align --R session aborts
RNA
Alignment
Rsubread
updated 11 days ago by
Wei Shi
★ 3.5k • written 12 days ago by
sreekalasn
• 0
0
votes
4
replies
540
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma
edgeR
rna
16 months ago
Nirad
• 0
0
votes
0
replies
237
views
Cross-cultivar RNA-seq analysis
RNA
Normalization
15 months ago
nancy
• 0
0
votes
2
replies
894
views
Normalizzation indipentent data from RNAAeq experiment
rna
normalization
7.9 years ago
aristotele_m
▴ 30
30 results • Page
1 of 1
Recent ...
Replies
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Comment: Error using ChAMP SVD analysis
by
CristEin
• 0
In fact, I found that the author may have caused the problem class(myNorm) %>% length() #equals 2 class(myNorm) == "data.…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
Oh sorry I missed the species. Yes they also match for chicken :-) (both being called "ENSGALT..."). The other is from NCBI
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Ok, have you looked cDNA fasta file for Chicken (maternal Broiler) Gallus gallus? I am using Kallisto for alignment and quantification. He…
Comment: DEXseq error unable to find an inherited method for function NSBS for signature
by
ta_awwad
▴ 10
Hi there, did you manage to solve this problem? thanks TA
Votes
DEXseq error unable to find an inherited method for function NSBS for signature CompressedIntegerList
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Awards
• All
Popular Question
to
ta_awwad
▴ 10
Scholar
to
k.vitting.seerup
▴ 120
Scholar
to
James W. MacDonald
60k
Popular Question
to
Matthew Ritchie
▴ 1000
Scholar
to
Thomas Carroll
▴ 410
Locations
• All
United Kingdom,
just now
United States,
3 minutes ago
Frankfurt am Main,
3 minutes ago
Norway,
10 minutes ago
United States,
14 minutes ago
Traffic: 469 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6