Bioconductor Rnaseq

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limma RNASeq voom

updated 1 day ago by Gordon Smyth 50k • written 1 day ago by taur.vil • 0

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147

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technicalReplicates BatchEffect limma RNASeq

5 days ago • updated 2 days ago catv • 0

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106

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limma edgeR RNASeq

updated 5 days ago by Gordon Smyth 50k • written 6 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 6 days ago by Michael Love 41k • written 6 days ago by 09191919 • 0

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119

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scRNAseq RNAseq

updated 14 days ago by ATpoint ★ 4.0k • written 16 days ago by Merav • 0

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809

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clusterProfiler RNASeq

updated 6 hours ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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884

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SingleCell RNASeq RNASeqData scRNAseq

updated 6 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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690

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 22 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

9 results • Page 1 of 1

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Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Answer: get BM error by James W. MacDonald 65k

The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…

Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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