Bioconductor Rnaseq

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 21 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

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690

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

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140

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technicalReplicates BatchEffect limma RNASeq

4 days ago • updated 1 day ago catv • 0

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883

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SingleCell RNASeq RNASeqData scRNAseq

updated 6 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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763

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clusterProfiler RNASeq

updated 5 days ago by sredemption • 0 • written 13 months ago by ruiqi.li ▴ 10

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limma RNASeq voom

updated 1 day ago by Gordon Smyth 50k • written 1 day ago by taur.vil • 0

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117

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scRNAseq RNAseq

updated 13 days ago by ATpoint ★ 4.0k • written 15 days ago by Merav • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 5 days ago by Michael Love 41k • written 5 days ago by 09191919 • 0

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105

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limma edgeR RNASeq

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by Shaimaa Gamal • 0

9 results • Page 1 of 1

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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