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rnaseq
•
reset
0
votes
2
replies
131
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Filtering and Reference Level for DESeq2
DESeq2
GeneFiltering
RNAseq
7 days ago • updated 6 days ago
kcarey
• 0
2
votes
2
replies
186
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma
fit
design
RNASeq
edgeR
14 days ago
Sabiha
▴ 20
0
votes
2
replies
157
views
RNA sequencing raw counts gene filtering
DESeq2
limma
RNAseq
14 days ago • updated 13 days ago
kcarey
• 0
1
vote
4
replies
233
views
DESeq2 Replicates
DESeq2
RNASeq
21 days ago
kcarey
• 0
1
vote
3
replies
257
views
DESEQ2 Batch Effect
DESeq2
BatchEffect
RNASeq
updated 23 days ago by
swbarnes2
★ 1.3k • written 26 days ago by
sap275
▴ 10
0
votes
4
replies
214
views
Interactions in batches of varying size with different number of replicates using limma
limma
RNASeq
DifferentialExpression
29 days ago • updated 27 days ago
mperalc
• 0
3
votes
5
replies
541
views
DESEQ Inquiry
DESeq2
rnaseqGene
RNASeqData
limma
RNASeq
updated 24 days ago by
Michael Love
41k • written 4 weeks ago by
sap275
▴ 10
0
votes
3
replies
366
views
dittobarplot Var error
RNASeq
ditto
dittoSeq
SingleR
written 11 weeks ago by
Fayrouz
• 0
2
votes
5
replies
1.3k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 13 months ago by
Rebekah
• 0
0
votes
2
replies
1.2k
views
Should immunoglobulin genes be filtered out during RNA-seq differential expression analysis
RNASeq
updated 17 days ago by
leedakyung1998
• 0 • written 2.6 years ago by
MP
• 0
0
votes
5
replies
9.1k
views
tximport all(file.exists(files)) is not TRUE
bioconductor
tximport
rnaseq
R
updated 8 days ago by
Eva
• 0 • written 7.5 years ago by
ctl
• 0
4
votes
16
replies
7.2k
views
Normalised counts from RUVg in RUVSeq
RUVg
ruvseq
rnaseq
updated 6 days ago by
Shaimaa Gamal
• 0 • written 8.9 years ago by
Pauly Lin
▴ 150
12 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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