Bioconductor Rnaseq

Showing : rnaseq • reset

votes

replies

1.8k

views

RNASeq edgeR RNASeq edgeR

updated 23 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

vote

replies

811

views

clusterProfiler RNASeq

updated 1 day ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

votes

replies

152

views

technicalReplicates BatchEffect limma RNASeq

6 days ago • updated 3 days ago catv • 0

votes

replies

886

views

SingleCell RNASeq RNASeqData scRNAseq

updated 7 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

votes

replies

690

views

biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

votes

views

DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 7 days ago by Michael Love 41k • written 7 days ago by 09191919 • 0

votes

117

views

limma edgeR RNASeq

updated 6 days ago by Gordon Smyth 50k • written 7 days ago by Shaimaa Gamal • 0

votes

views

limma RNASeq voom

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by taur.vil • 0

votes

views

DESeq2 RNAseq

updated 19 hours ago by Michael Love 41k • written 23 hours ago by kcarey • 0

votes

120

views

scRNAseq RNAseq

updated 15 days ago by ATpoint ★ 4.0k • written 17 days ago by Merav • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0