Bioconductor Rnaseq

Showing : rnaseq • reset

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DESeq2 RNAseq

updated 6 hours ago by Michael Love 41k • written 9 hours ago by kcarey • 0

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809

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clusterProfiler RNASeq

updated 17 hours ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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limma RNASeq voom

updated 2 days ago by Gordon Smyth 50k • written 2 days ago by taur.vil • 0

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149

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technicalReplicates BatchEffect limma RNASeq

5 days ago • updated 2 days ago catv • 0

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112

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limma edgeR RNASeq

updated 5 days ago by Gordon Smyth 50k • written 6 days ago by Shaimaa Gamal • 0

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DESeq2 LongRead DEXSeq IsoformSwitchAnalyzeR RNASeq

updated 6 days ago by Michael Love 41k • written 6 days ago by 09191919 • 0

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884

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SingleCell RNASeq RNASeqData scRNAseq

updated 7 days ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

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119

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scRNAseq RNAseq

updated 14 days ago by ATpoint ★ 4.0k • written 16 days ago by Merav • 0

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1.8k

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RNASeq edgeR RNASeq edgeR

updated 22 days ago by Gordon Smyth 50k • written 11.5 years ago by Maria Keays ▴ 30

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690

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biomart rnaseq

written 5.2 years ago by jarod_v6@libero.it ▴ 40

10 results • Page 1 of 1

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Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0