Bioconductor Rnaseq123

Showing : rnaseq123 • reset

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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4.4k

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RNAseq123

written 3.3 years ago by mmicky5050 • 0

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3.1k

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RNAseq123

16 months ago afsanarupa1 • 0

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2.4k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.0 years ago Alan • 0

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1.5k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Mohamed ▴ 30

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1.3k

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RNAseq123

updated 11 weeks ago by difraiadomenico • 0 • written 3.1 years ago by demirkalecy ▴ 10

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1.0k

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edgeR RNAseq123

updated 16 months ago by Gordon Smyth 50k • written 17 months ago by Istvan Albert ▴ 50

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1000

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RNAseq123 Rna

updated 22 months ago by Gordon Smyth 50k • written 22 months ago by Mikołaj Mierzejewski • 0

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804

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snpeff python tophat r RNAseq123

updated 2.7 years ago by Kevin Blighe ★ 3.9k • written 2.7 years ago by kusum • 0

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797

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DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 16 months ago by Michael Love 41k • written 16 months ago by irish.prg • 0

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693

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by Mohamed ▴ 30

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542

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RNAseq123

21 months ago Mohamed ▴ 30

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522

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DESeq2 RNAseq123

14 months ago fatemeh.peimani • 0

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500

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CircularRNA RNASeq RNAseq123

3.2 years ago rpokhre2 • 0

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318

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RNASeqData RNAseq123

updated 4 months ago by ATpoint ★ 4.0k • written 4 months ago by kaurprab • 0

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RNAseq123

2 days ago Lluís Revilla Sancho ▴ 730

16 results • Page 1 of 1

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Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Awards • All

Scholar to ATpoint ★ 4.0k