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rnaseqDTU
•
reset
1
vote
3
replies
1.2k
views
Visualization for DE transcripts
rnaseqdtu
4.7 years ago
rbenel
▴ 40
0
votes
3
replies
1.0k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
Jack.Hearn
• 0
1
vote
1
reply
1.3k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 4.9 years ago by
Michael Love
41k • written 5.2 years ago by
fiona.dick91
▴ 60
2
votes
2
replies
1.1k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
fiona.dick91
▴ 60
3
votes
9
replies
2.1k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
rbenel
▴ 40
2
votes
8
replies
1.2k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.2 years ago
rbenel
▴ 40
2
votes
4
replies
1.6k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.2 years ago
d-joester
▴ 20
16
votes
25
replies
2.9k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.0 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.5k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.0 years ago
saddamhusain77
• 0
2
votes
2
replies
813
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
nicog
• 0
0
votes
2
replies
677
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
dixit.anirudha
• 0
0
votes
1
reply
676
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 3.7 years ago by
Michael Love
41k • written 3.8 years ago by
debatosh das
▴ 10
0
votes
1
reply
591
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
rohitsatyam102
▴ 20
2
votes
7
replies
1.2k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.6 years ago
rbenel
▴ 40
1
vote
5
replies
1.2k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
24 months ago • updated 22 months ago
ksong
▴ 10
0
votes
5
replies
1.2k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
2.6 years ago
bioinformatic_trainee
▴ 10
1
vote
5
replies
1.5k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.4 years ago by
Michael Love
41k • written 5.5 years ago by
rbenel
▴ 40
2
votes
2
replies
661
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
21 months ago • updated 20 months ago
wangziwei0010
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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