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rnaseqDTU
•
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1
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5
replies
268
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Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
6 weeks ago • updated 2 days ago
ksong
• 0
2
votes
7
replies
376
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
8 months ago
rbenel
▴ 20
0
votes
5
replies
277
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
9 months ago
bioinformatic_trainee
• 0
0
votes
1
reply
195
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 18 months ago by
Michael Love
36k • written 18 months ago by
rohitsatyam102
▴ 20
0
votes
1
reply
258
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 22 months ago by
Michael Love
36k • written 22 months ago by
debatosh das
▴ 10
0
votes
2
replies
248
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 24 months ago by
Michael Love
36k • written 24 months ago by
dixit.anirudha
• 0
2
votes
2
replies
349
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 2.7 years ago by
Michael Love
36k • written 2.7 years ago by
nicog
• 0
1
vote
3
replies
482
views
Visualization for DE transcripts
rnaseqdtu
2.9 years ago
rbenel
▴ 20
1
vote
1
reply
770
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 3.1 years ago by
Michael Love
36k • written 3.3 years ago by
fiona.dick91
▴ 10
0
votes
11
replies
874
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
3.1 years ago
saddamhusain77
• 0
1
vote
5
replies
1.1k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
updated 3.1 years ago by
Michael Love
36k • written 3.1 years ago by
fiona.dick91
▴ 10
2
votes
4
replies
882
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
3.3 years ago
d-joester
▴ 20
2
votes
8
replies
575
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
3.3 years ago
rbenel
▴ 20
2
votes
9
replies
992
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 3.3 years ago by
Michael Love
36k • written 3.3 years ago by
rbenel
▴ 20
2
votes
2
replies
599
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 3.3 years ago by
Michael Love
36k • written 3.3 years ago by
fiona.dick91
▴ 10
0
votes
3
replies
530
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 3.5 years ago by
Michael Love
36k • written 3.5 years ago by
Jack.Hearn
• 0
1
vote
5
replies
741
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 3.6 years ago by
Michael Love
36k • written 3.6 years ago by
rbenel
▴ 20
17 results • Page
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Answer: Using featureCounts and downloading Rsubread
by
James W. MacDonald
59k
You need to tell `BiocManager;;install` that you want to install the `Rsubread` package. ``` BiocManager::install("Rsubread") library(…
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
• 0
Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
Answer: Get MANE transcripts from TxDb.Hsapiens.UCSC.hg38.knownGene
by
James W. MacDonald
59k
There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
Comment: Handling of missing values in limma
by
AyHi
• 0
Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
Comment: merging VCF files
by
lesefo6448
• 0
You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
Votes
Answer: Load packages when using BatchtoolsParam
Comment: Load packages when using BatchtoolsParam
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
Answer: edgeR: the F-statistics changed after removing lowly expressed gene
A: DESeq2: thousands of NA for pvalues?
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