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rnaseqDTU
•
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1
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5
replies
290
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Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
8 weeks ago • updated 11 days ago
ksong
• 0
2
votes
7
replies
388
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
9 months ago • updated 8 months ago
rbenel
▴ 20
0
votes
5
replies
283
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
9 months ago
bioinformatic_trainee
• 0
0
votes
1
reply
196
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 18 months ago by
Michael Love
37k • written 18 months ago by
rohitsatyam102
▴ 20
0
votes
1
reply
265
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 23 months ago by
Michael Love
37k • written 23 months ago by
debatosh das
▴ 10
0
votes
2
replies
253
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 2.0 years ago by
Michael Love
37k • written 2.0 years ago by
dixit.anirudha
• 0
2
votes
2
replies
352
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 2.8 years ago by
Michael Love
37k • written 2.8 years ago by
nicog
• 0
1
vote
3
replies
487
views
Visualization for DE transcripts
rnaseqdtu
2.9 years ago
rbenel
▴ 20
1
vote
1
reply
774
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 3.1 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
0
votes
11
replies
881
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
3.1 years ago
saddamhusain77
• 0
1
vote
5
replies
1.1k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
updated 3.1 years ago by
Michael Love
37k • written 3.2 years ago by
fiona.dick91
▴ 10
2
votes
4
replies
889
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
3.3 years ago
d-joester
▴ 20
2
votes
8
replies
583
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
3.3 years ago
rbenel
▴ 20
2
votes
9
replies
1.0k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
rbenel
▴ 20
2
votes
2
replies
604
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
0
votes
3
replies
532
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
Jack.Hearn
• 0
1
vote
5
replies
746
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 3.6 years ago by
Michael Love
37k • written 3.6 years ago by
rbenel
▴ 20
17 results • Page
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Answer: Discrepancy between plot colours during exomeCopy tutorial
by
Michael Love
37k
I’m not sure why the plot looks this way. You may want to look at one sample at a time. Also note there are more developed tools, I haven’t…
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Jiping Wang
▴ 70
that's terrific. thanks. thanks for your comment on `pcoverageByTranscript` function as well. yes, we understand it's for transcript. that…
Answer: Help with constructing design matrix for edgeR/limma
by
Gordon Smyth
45k
If the infertile subpopulations have different expression profiles then you need ``` design <- model.matrix(~Pathology) ``` and not includ…
Comment: edgeR : results from goana and kegga functions show opposite sig. p-value
by
sharvari gujja
▴ 30
Thank you so much!
Comment: Subsetting operation on CompressedGRangesList object 'x' produces a result tha
by
Hervé Pagès
15k
Hi Jiping, Sorry for the slow response and thanks for providing those details. They allowed me to reproduce the problem and to come up wit…
Votes
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
DESeq2: likelihood ratio test interpretation, multifactor
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
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