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rnaseqDTU
•
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16
votes
25
replies
2.9k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.0 years ago by
fiona.dick91
▴ 60
0
votes
11
replies
1.5k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.0 years ago
saddamhusain77
• 0
3
votes
9
replies
2.1k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
rbenel
▴ 40
2
votes
8
replies
1.2k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
5.2 years ago
rbenel
▴ 40
2
votes
7
replies
1.2k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
2.6 years ago
rbenel
▴ 40
1
vote
5
replies
1.2k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
24 months ago • updated 22 months ago
ksong
▴ 10
1
vote
5
replies
1.5k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 5.4 years ago by
Michael Love
41k • written 5.5 years ago by
rbenel
▴ 40
0
votes
5
replies
1.2k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
2.6 years ago
bioinformatic_trainee
▴ 10
2
votes
4
replies
1.6k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.2 years ago
d-joester
▴ 20
1
vote
3
replies
1.2k
views
Visualization for DE transcripts
rnaseqdtu
4.7 years ago
rbenel
▴ 40
0
votes
3
replies
1.0k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
Jack.Hearn
• 0
2
votes
2
replies
813
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
nicog
• 0
0
votes
2
replies
677
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
dixit.anirudha
• 0
2
votes
2
replies
1.1k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
fiona.dick91
▴ 60
2
votes
2
replies
661
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
21 months ago • updated 20 months ago
wangziwei0010
▴ 10
0
votes
1
reply
676
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 3.7 years ago by
Michael Love
41k • written 3.8 years ago by
debatosh das
▴ 10
0
votes
1
reply
590
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
rohitsatyam102
▴ 20
1
vote
1
reply
1.3k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 4.9 years ago by
Michael Love
41k • written 5.2 years ago by
fiona.dick91
▴ 60
18 results • Page
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Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
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The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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