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rnaseqDTU
•
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0
votes
11
replies
881
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
3.1 years ago
saddamhusain77
• 0
2
votes
9
replies
1.0k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
rbenel
▴ 20
2
votes
8
replies
583
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
3.3 years ago
rbenel
▴ 20
2
votes
7
replies
388
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
9 months ago • updated 8 months ago
rbenel
▴ 20
0
votes
5
replies
283
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
9 months ago
bioinformatic_trainee
• 0
1
vote
5
replies
1.1k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
updated 3.1 years ago by
Michael Love
37k • written 3.2 years ago by
fiona.dick91
▴ 10
1
vote
5
replies
290
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
8 weeks ago • updated 12 days ago
ksong
• 0
1
vote
5
replies
746
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 3.6 years ago by
Michael Love
37k • written 3.6 years ago by
rbenel
▴ 20
2
votes
4
replies
889
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
3.3 years ago
d-joester
▴ 20
0
votes
3
replies
532
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 3.5 years ago by
Michael Love
37k • written 3.5 years ago by
Jack.Hearn
• 0
1
vote
3
replies
487
views
Visualization for DE transcripts
rnaseqdtu
2.9 years ago
rbenel
▴ 20
2
votes
2
replies
604
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
0
votes
2
replies
253
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 2.0 years ago by
Michael Love
37k • written 2.0 years ago by
dixit.anirudha
• 0
2
votes
2
replies
352
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 2.8 years ago by
Michael Love
37k • written 2.8 years ago by
nicog
• 0
0
votes
1
reply
265
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 23 months ago by
Michael Love
37k • written 23 months ago by
debatosh das
▴ 10
1
vote
1
reply
774
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 3.1 years ago by
Michael Love
37k • written 3.4 years ago by
fiona.dick91
▴ 10
0
votes
1
reply
196
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 19 months ago by
Michael Love
37k • written 19 months ago by
rohitsatyam102
▴ 20
17 results • Page
1 of 1
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Replies
Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Gordon Smyth
45k
When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…
Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Mohamed
• 0
Thanks a lot, will try this and see.
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Steve Lianoglou
13k
> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…
Comment: Italicise
by
Kevin Blighe
3.5k
Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…
Comment: Need help for ProStaR Stand-alone install
by
Wang
• 0
Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI …
Votes
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
DESeq2: likelihood ratio test interpretation, multifactor
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to
Michael Love
37k
Popular Question
to
svlachavas
▴ 780
Popular Question
to
Gordon Smyth
45k
Scholar
to
Rory Stark
★ 4.4k
Popular Question
to
JK Kim
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