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Comment: featureCounts: 0% successfully assigned fragments
by
ATpoint
★
1.2k
What you have to do is to check whether the chromosome names in the BAM file are part of the GTF. Do it programatically, not by eye. Extrac…
Comment: champ.SVD() error, assumes standard class() function will return single string
by
Basti
▴
280
What is class(`yourbeta`) ?
Answer: methylated/unmethylated media threshold (EPIC assay)
by
ramonfallon
•
0
OK, so the closest I could get as an answer to this was from a Kasper Hansen Illumina video from 2013
Where he says there have been some d…
Comment: Load packages when using BatchtoolsParam
by
jianhai.zhang
•
0
You are right: In bplapply(), the environment of FUN (other than the global environment) is serialized to the workers. I tested `smallFun(x…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
Since I almost exclusively work with data from model organisms, I never needed to do this. So I don't have any hands-on experience with thi…
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