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rnaseqDTU
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Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
8 weeks ago • updated 12 days ago
ksong
• 0
2
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7
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388
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Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
9 months ago • updated 8 months ago
rbenel
▴ 20
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5
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283
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DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
9 months ago
bioinformatic_trainee
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Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Gordon Smyth
45k
When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…
Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Mohamed
• 0
Thanks a lot, will try this and see.
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
by
Steve Lianoglou
13k
> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…
Comment: Italicise
by
Kevin Blighe
3.5k
Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…
Comment: Need help for ProStaR Stand-alone install
by
Wang
• 0
Hi, I have installed the "Prostar" package, and loaded in my rstudio work session. But, when I trying to use the Prostar() for open a GUI …
Votes
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
DESeq2: likelihood ratio test interpretation, multifactor
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