Bioconductor RnaseqDTU

Showing : rnaseqDTU • reset

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3.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

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1.5k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.1 years ago • updated 5.0 years ago saddamhusain77 • 0

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2.1k

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rnaseqDTU dtu

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by rbenel ▴ 40

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1.2k

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rnaseqdtu

5.2 years ago rbenel ▴ 40

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1.2k

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DEXSeq rnaseqDTU

2.7 years ago • updated 2.6 years ago rbenel ▴ 40

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1.2k

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rnaseqDTU

2.1 years ago • updated 23 months ago ksong ▴ 10

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1.5k

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DEXSeq StageR rnaseqDTU

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by rbenel ▴ 40

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1.2k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

2.7 years ago bioinformatic_trainee ▴ 10

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1.6k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.2 years ago d-joester ▴ 20

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1.2k

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rnaseqdtu

4.8 years ago rbenel ▴ 40

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1.0k

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drimseq rnaseqdtu stager

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Jack.Hearn • 0

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833

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rnaseqDTU

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by nicog • 0

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695

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rnaseqDTU

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by dixit.anirudha • 0

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1.1k

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DTU DRIMSeq rnaseqDTU

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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677

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rnaseqDTU DRIMSeq

21 months ago wangziwei0010 ▴ 10

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700

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by debatosh das ▴ 10

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609

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rnaseqDTU

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by rohitsatyam102 ▴ 20

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1.3k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

18 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0