Bioconductor RnaseqDTU

Showing : rnaseqDTU • reset

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3.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

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677

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rnaseqDTU DRIMSeq

21 months ago wangziwei0010 ▴ 10

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1.2k

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rnaseqDTU

2.1 years ago • updated 23 months ago ksong ▴ 10

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1.2k

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DEXSeq rnaseqDTU

2.7 years ago • updated 2.6 years ago rbenel ▴ 40

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1.2k

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

2.7 years ago bioinformatic_trainee ▴ 10

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609

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rnaseqDTU

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by rohitsatyam102 ▴ 20

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700

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by debatosh das ▴ 10

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696

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rnaseqDTU

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by dixit.anirudha • 0

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833

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rnaseqDTU

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by nicog • 0

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1.2k

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rnaseqdtu

4.8 years ago rbenel ▴ 40

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1.3k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.5k

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rnaseqDTU DRIMseq DEXseq rna-seq

5.1 years ago • updated 5.0 years ago saddamhusain77 • 0

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1.6k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.2 years ago d-joester ▴ 20

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1.2k

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rnaseqdtu

5.2 years ago rbenel ▴ 40

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2.1k

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rnaseqDTU dtu

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by rbenel ▴ 40

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1.1k

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DTU DRIMSeq rnaseqDTU

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.0k

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drimseq rnaseqdtu stager

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Jack.Hearn • 0

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1.5k

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DEXSeq StageR rnaseqDTU

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by rbenel ▴ 40

18 results • Page 1 of 1

Recent ...

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0