Showing : rnaseqGene • reset
3
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5
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7.6k
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How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
0
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2
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5.1k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.0 years ago greg.mulhearn • 0
0
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6
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3.9k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.5 years ago JunLVI ▴ 40
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2
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3.0k
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
2
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5
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3.0k
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Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.0 years ago cirisarri95 • 0
0
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7
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3.0k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
6
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8
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2.4k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 8.8 years ago by ★ 8.2k • written 8.8 years ago by • 0
0
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1
reply
2.0k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
4
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1
reply
1.9k
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mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.5 years ago by 41k • written 2.5 years ago by ▴ 10
0
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4
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1.8k
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workflow.R in BioC 3.3
workflows rnaseqgene
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
3
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2
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1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
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1
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1.8k
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can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 7.8 years ago by ★ 6.8k • written 7.8 years ago by ▴ 20
0
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3
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1.7k
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Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.0 years ago Cheng-Yuan Kao ▴ 100
2
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2
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1.6k
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.8 years ago SUMIT • 0
2
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5
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1.6k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.0 years ago by 3.8k • written 6.0 years ago by • 0
0
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3
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1.6k
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 17 months ago by 65k • written 17 months ago by • 0
6
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10
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1.4k
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rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.4 years ago by 41k • written 2.5 years ago by ▴ 20
1
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6
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1.3k
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Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.2 years ago Seaweed • 0
0
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2
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1.3k
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Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.1 years ago by ▴ 160 • written 6.1 years ago by • 0
1
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3
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1.3k
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how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.3 years ago melkile26 • 0
0
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0
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1.2k
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Minor error in the RNASeqGene workflow
rnaseqgene
9.2 years ago snf ▴ 10
1
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2
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1.2k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
0
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2
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905
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DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.1 years ago courtney.stairs • 0
0
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1
reply
855
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.3 years ago by ★ 4.0k • written 2.3 years ago by • 0
3
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3
replies
851
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 3.9 years ago by 41k • written 3.9 years ago by ▴ 40
2
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2
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803
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.5 years ago • updated 11 months ago diangomaiga • 0
1
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2
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778
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toptable sort .by set
limma rnaseqGene
23 months ago snowmattin • 0
1
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3
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765
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Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 15 months ago by 41k • written 15 months ago by • 0
0
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2
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765
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R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 9 months ago by 41k • written 9 months ago by • 0
1
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3
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750
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.3 years ago by 41k • written 4.3 years ago by ★ 1.5k
0
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0
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724
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display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
3
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5
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585
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 6 weeks ago by 41k • written 7 weeks ago by ▴ 10
1
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4
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524
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
5
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6
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515
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
12 weeks ago Shaimaa Gamal • 0
0
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2
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246
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RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 4 weeks ago by 50k • written 5 weeks ago by • 0
2
votes
1
reply
201
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 10 weeks ago by 41k • written 11 weeks ago by ▴ 20
36 results • Page 1 of 1
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Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Fair enough, I guess it depends on the comparison being made, right? If one was interested in a feature comparing Timepoint A vs B, then it…
Comment: DESeq2 setting significant p-value by Dev • 0
Sir but when I put in the expression data via the csv file, it was showing the gene names then but now when i set it in the form factor it …
Answer: OrgDb for maize by James W. MacDonald 65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR? by i.atanasoai • 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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