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rnaseq_analysis
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7
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1.9k
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limma - Multi-level Experiments - time course data
limma
limma voom
rnaseq_analysis
DEG
6.1 years ago • updated 5.1 years ago
SPbeginner
• 0
1
vote
3
replies
1.3k
views
Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
rnaseq_analysis
KEGG
nonmodel species
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
laural710
• 0
0
votes
0
replies
911
views
Sequence composition effect
sequencing
rnaseq_analysis
6.3 years ago
alemutak
• 0
1
vote
3
replies
1.4k
views
RNASeq data analysis with bio replicates
rnaseq_analysis
6.9 years ago
fakhter1
• 0
1
vote
1
reply
1.0k
views
How to simulate count data to test rnaseq analysis code?
rnaseq_analysis
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
kjo
▴ 70
3
votes
3
replies
4.3k
views
How to do a confounding variable adjustment without using the treatment information?
deseq2
rnaseq_analysis
variancestabilizingtransformation
confounders
updated 7.9 years ago by
Michael Love
41k • written 7.9 years ago by
ompandey
▴ 10
1
vote
2
replies
1.7k
views
Limma model fitting: including and excluding replicates in the model gives different results in RNAseq Analysis
limma
RNAseq_Analysis
model.matrix
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
anver
• 0
7 results • Page
1 of 1
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Replies
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from `str(ortologos_filtrados)` data.frame': 14 obs…
Answer: Cannabis OrgDb
by
Guido Hooiveld
★ 3.9k
> library(AnnotationHub) > hub <- AnnotationHub() snapshotDate(): 2023-10-23 > query(hub, c("cannabis","orgdb") ) …
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
To increase readability: could you please reformat your post? Select the R--code, and click the `CODE` button... the 5th button.
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from str(ortologos_filtrados) data.frame': 14 obs. …
Votes
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Awards
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Michael Love
41k
Popular Question
to
shepherl
3.8k
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Gordon Smyth
50k
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taur.vil
• 0
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Yuan Tian
▴ 280
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Brazil,
1 minute ago
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