Bioconductor Rnaseqdata

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EnrichmentBrowser BrachypodiumDB RNASeqData

updated 16 days ago by James W. MacDonald 65k • written 16 days ago by Leyre • 0

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BatchEffect RNASeqData WGCNA DESeq2

updated 22 hours ago by Ashley • 0 • written 10 months ago by zxc741xb • 0

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SingleCell RNASeq RNASeqData scRNAseq

updated 17 hours ago by wichaidi • 0 • written 17 months ago by irvin.ng • 0

3 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

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