Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rnaseqdtu
•
reset
16
votes
25
replies
3.9k
views
dtuScaledTPM vs lengthScaledTPM in DTU analysis
tximport
dtu
salmon
TPM
rnaseqDTU
written 5.9 years ago by
fiona.dick91
▴ 60
3
votes
9
replies
2.7k
views
Differential transcript expression (DTE) analysis
rnaseqDTU
dtu
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
rbenel
▴ 40
2
votes
4
replies
1.9k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
6.0 years ago
d-joester
▴ 20
0
votes
11
replies
1.9k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
5.9 years ago • updated 5.8 years ago
saddamhusain77
• 0
1
vote
5
replies
1.9k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 6.3 years ago by
Michael Love
43k • written 6.3 years ago by
rbenel
▴ 40
1
vote
3
replies
1.8k
views
Visualization for DE transcripts
rnaseqdtu
5.6 years ago
rbenel
▴ 40
2
votes
7
replies
1.7k
views
Fold Change for rnaseq DTU
DEXSeq
rnaseqDTU
3.5 years ago • updated 3.4 years ago
rbenel
▴ 40
1
vote
1
reply
1.6k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.8 years ago by
Michael Love
43k • written 6.1 years ago by
fiona.dick91
▴ 60
0
votes
5
replies
1.6k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
3.5 years ago
bioinformatic_trainee
▴ 10
1
vote
5
replies
1.6k
views
Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
rnaseqDTU
2.9 years ago • updated 2.8 years ago
ksong
▴ 10
2
votes
8
replies
1.5k
views
stageR following DEXSeq two-stage analysis
rnaseqdtu
6.1 years ago • updated 6.0 years ago
rbenel
▴ 40
2
votes
2
replies
1.4k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
1.3k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 6.2 years ago by
Michael Love
43k • written 6.2 years ago by
Jack.Hearn
• 0
2
votes
2
replies
1.1k
views
Statistics for within-condition transcript abundance comparisons
rnaseqDTU
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
nicog
• 0
2
votes
2
replies
952
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
2.6 years ago
wangziwei0010
▴ 10
0
votes
1
reply
893
views
How to obtain the specific genelists mentioned in the RNASeq DTU workflow?
rnaseqdtu
RNASeq
DEXSeq
DESeq2
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
debatosh das
▴ 10
0
votes
2
replies
869
views
rnaseqDTU Workflow, Precision estimation error.
rnaseqDTU
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
dixit.anirudha
• 0
0
votes
1
reply
776
views
Plotting results of rnaseqDTU
rnaseqDTU
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
rohitsatyam102
▴ 20
1
vote
1
reply
339
views
Considerations behind the choice of RNAseq Differential Expression Analysis Tools
fishpond
DESeq2
rnaseqDTU
updated 5 weeks ago by
Michael Love
43k • written 5 weeks ago by
muhammadsohailraza
• 0
19 results • Page
1 of 1
Recent ...
Replies
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: Store Matrix in DataFrame Cell
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
Awards
• All
Teacher
to
James W. MacDonald
68k
Popular Question
to
Hervé Pagès
16k
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Scholar
to
ATpoint
★ 4.7k
Locations
• All
Wageningen University, Wageningen, the Netherlands,
26 minutes ago
Australia,
28 minutes ago
United States,
1 hour ago
United States,
1 hour ago
United States,
2 hours ago
Traffic: 1092 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6