Bioconductor Rnaseqdtu

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tximport dtu salmon TPM rnaseqDTU

written 5.0 years ago by fiona.dick91 ▴ 60

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rnaseqDTU dtu

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by rbenel ▴ 40

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stageR rnaseqDTU DRIMSeq DEXSeq

5.2 years ago d-joester ▴ 20

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rnaseqDTU DRIMseq DEXseq rna-seq

5.0 years ago saddamhusain77 • 0

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DEXSeq StageR rnaseqDTU

updated 5.5 years ago by Michael Love 41k • written 5.5 years ago by rbenel ▴ 40

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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rnaseqDTU

2.0 years ago • updated 23 months ago ksong ▴ 10

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1.2k

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DEXSeq rnaseqDTU

2.7 years ago • updated 2.6 years ago rbenel ▴ 40

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1.2k

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rnaseqdtu

5.2 years ago rbenel ▴ 40

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rnaseqdtu

4.8 years ago rbenel ▴ 40

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

2.7 years ago bioinformatic_trainee ▴ 10

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1.1k

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DTU DRIMSeq rnaseqDTU

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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drimseq rnaseqdtu stager

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by Jack.Hearn • 0

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827

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rnaseqDTU

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by nicog • 0

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692

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by debatosh das ▴ 10

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691

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rnaseqDTU

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by dixit.anirudha • 0

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675

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rnaseqDTU DRIMSeq

21 months ago wangziwei0010 ▴ 10

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606

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rnaseqDTU

updated 3.5 years ago by Michael Love 41k • written 3.5 years ago by rohitsatyam102 ▴ 20

18 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

Answer: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

The genes are automatically ordered within `fgsea`, there is no need to sort them manually.

Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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