Bioconductor Rnaseqdtu

Showing : rnaseqdtu • reset

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4.7k

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tximport dtu salmon TPM rnaseqDTU

written 6.8 years ago by fiona.dick91 ▴ 60

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3.4k

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rnaseqDTU dtu

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbenel ▴ 50

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rnaseqDTU

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by nicog • 0

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1.6k

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DTU DRIMSeq rnaseqDTU

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by fiona.dick91 ▴ 60

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2.1k

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DEXSeq rnaseqDTU

4.4 years ago rbenel ▴ 50

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rnaseqdtu

7.0 years ago rbenel ▴ 50

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stageR rnaseqDTU DRIMSeq DEXSeq

7.0 years ago d-joester ▴ 20

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1.2k

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rnaseqDTU DRIMSeq

3.5 years ago wangziwei0010 ▴ 10

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1.2k

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fishpond DESeq2 rnaseqDTU

updated 12 months ago by Michael Love 43k • written 12 months ago by muhammadsohailraza • 0

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1.9k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.7 years ago by Michael Love 43k • written 7.0 years ago by fiona.dick91 ▴ 60

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2.3k

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rnaseqdtu

6.6 years ago • updated 6.5 years ago rbenel ▴ 50

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2.0k

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rnaseqDTU

3.8 years ago • updated 3.7 years ago ksong ▴ 10

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2.3k

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DEXSeq StageR rnaseqDTU

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by rbenel ▴ 50

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976

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rnaseqDTU

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by rohitsatyam102 ▴ 20

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2.3k

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rnaseqDTU DRIMseq DEXseq rna-seq

6.8 years ago saddamhusain77 • 0

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1.7k

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drimseq rnaseqdtu stager

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Jack.Hearn • 0

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rnaseqDTU Normalization

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by Samuel • 0

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RNA-seq DRIMSeq DEXSeq rnaseqDTU

4.4 years ago bioinformatic_trainee ▴ 10

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rnaseqDTU

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by dixit.anirudha • 0

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1.1k

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rnaseqdtu RNASeq DEXSeq DESeq2

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by debatosh das ▴ 10

20 results • Page 1 of 1

Recent ...

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Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

Flagging protein groups as likely contaminants in this way will be fine for a limpa analysis. The `Cont_` proteins can optionally stay in f…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

I think that some historical context will help here. Aaron Lun was a PhD student in my Lab back in 2015, and the analysis approach that he …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You just need the mouse identifier (controls baseline) and the group specific allelic effect.

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Julia Broadbent • 0

Hi Emily, Just sharing a resource for handling contaminants - we use the methods described in [Frankenfield et al. (2022)](https://pubs.acs…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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