Showing : rnaseqgene • reset
3
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5
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How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by • 0
2
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5
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3.0k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.0 years ago cirisarri95 • 0
6
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8
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2.4k
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error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 8.8 years ago by ★ 8.2k • written 8.8 years ago by • 0
0
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2
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5.1k
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Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.0 years ago greg.mulhearn • 0
0
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2
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757
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R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 9 months ago by 41k • written 9 months ago by • 0
0
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2
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1.3k
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Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.1 years ago by ▴ 160 • written 6.1 years ago by • 0
0
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2
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242
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RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 4 weeks ago by 50k • written 4 weeks ago by • 0
0
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2
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3.0k
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
1
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2
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1.2k
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how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
0
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2
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904
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DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.1 years ago courtney.stairs • 0
0
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7
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3.0k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
3
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3
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849
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 3.9 years ago by 41k • written 3.9 years ago by ▴ 40
2
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1
reply
199
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Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 10 weeks ago by 41k • written 10 weeks ago by ▴ 20
1
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6
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1.3k
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Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.2 years ago Seaweed • 0
1
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3
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749
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typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.3 years ago by 41k • written 4.3 years ago by ★ 1.5k
0
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3
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1.7k
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Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.0 years ago Cheng-Yuan Kao ▴ 100
3
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2
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1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
0
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1
reply
2.0k
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Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
0
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4
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1.8k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
0
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1
reply
1.8k
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can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 7.8 years ago by ★ 6.8k • written 7.8 years ago by ▴ 20
2
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5
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1.6k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.0 years ago by 3.8k • written 6.0 years ago by • 0
1
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3
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1.3k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.3 years ago melkile26 • 0
0
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1
reply
855
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.3 years ago by ★ 4.0k • written 2.3 years ago by • 0
6
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10
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1.4k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.4 years ago by 41k • written 2.4 years ago by ▴ 20
3
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5
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583
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DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 6 weeks ago by 41k • written 7 weeks ago by ▴ 10
1
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2
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776
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toptable sort .by set
limma rnaseqGene
23 months ago snowmattin • 0
2
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2
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803
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Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.5 years ago • updated 11 months ago diangomaiga • 0
1
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3
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761
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Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 15 months ago by 41k • written 15 months ago by • 0
5
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6
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512
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
12 weeks ago Shaimaa Gamal • 0
1
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4
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520
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 5 months ago by 41k • written 5 months ago by ▴ 60
0
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3
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1.6k
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 17 months ago by 65k • written 17 months ago by • 0
4
votes
1
reply
1.9k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.5 years ago by 41k • written 2.5 years ago by ▴ 10
2
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2
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1.6k
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.8 years ago SUMIT • 0
0
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0
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722
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display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
0
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6
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3.9k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.5 years ago JunLVI ▴ 40
0
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0
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1.2k
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Minor error in the RNASeqGene workflow
rnaseqgene
9.2 years ago snf ▴ 10
36 results • Page 1 of 1
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Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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