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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
•
0
Yes you are right, we have 24 RNA-seq libraries in total.
The replicates come from the same population of plants, but independent from tho…
Comment: cell_count column in SpatialExperiment Object
by
alan.ocallaghan
▴
120
Of the columns there, sum and total both refer to the total number of transcripts per observation (per spot, presumably, for Visium data). …
Comment: MA plot
by
Nathalie
▴
10
Thank you again for your help. It's very nice of you to take the time to help a newbie. I downloaded your files, it will allow me to better…
Comment: MA plot
by
Guido Hooiveld
★
3.5k
Yes, some of the values in your input don't make sense.
Yet, since you just started learning below some code to use to read in a tab delim…
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