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rnaseqpower
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
4 months ago
drewhaydensteele
• 0
0
votes
1
reply
384
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 6 months ago by
Basti
▴ 770 • written 6 months ago by
Luke
• 0
1
vote
3
replies
775
views
Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower
edgeR
DifferentialExpression
limma
RNASeq
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
Sara
• 0
0
votes
0
replies
506
views
Typo in citation for RNASeqPower
RNASeqPower
citation
22 months ago
stephenjjohnson
• 0
0
votes
3
replies
1.8k
views
How to calculate coefficient of variation within group?
edgeR
limma
RNASeqPower
updated 2.2 years ago by
Gordon Smyth
50k • written 3.1 years ago by
Ahdee
▴ 50
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.2 years ago by
m.van_iterson
▴ 20 • written 8.2 years ago by
roser.navarro
• 0
0
votes
1
reply
1.2k
views
Depth or # of reads for RNASeqPower
rnaseqpower
9.5 years ago
drnknmstrr
• 0
0
votes
0
replies
1.0k
views
Power Calculation of multiple factors design of RNA-sequencing study
edgeR
DESeq
RNASeqPower
edgeR
DESeq
RNASeqPower
10.1 years ago
Guest User
★ 13k
8 results • Page
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Comment: Estimating Cell Counts for EPIC V2 array data
by
normawiedman059
• 0
0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…
Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
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A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
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