Bioconductor Rnaseqpower

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RNASeqPower removeBatchEffect cpm Batcheffect

7 months ago sukeshinik5 ▴ 20

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RNASeqPower edgeR DifferentialExpression limma RNASeq

updated 2.0 years ago by Gordon Smyth 52k • written 2.0 years ago by Sara • 0

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1.3k

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featurecounts rnas RNASeqPower

7 months ago yasmin.hilliam ▴ 10

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992

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

17 months ago drewhaydensteele • 0

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831

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 19 months ago by Basti ▴ 780 • written 19 months ago by Luke • 0

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1.2k

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edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower

11.2 years ago Guest User ★ 13k

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692

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RNASeqPower citation

2.9 years ago stephenjjohnson • 0

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432

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RNA RNASeqPower DEGseq

written 6 months ago by Jonathan • 0

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1.4k

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rnaseqpower

10.6 years ago drnknmstrr • 0

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rnaseqpower sspa sample size sequencing complex-design

updated 9.2 years ago by m.van_iterson ▴ 20 • written 9.3 years ago by roser.navarro • 0

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2.9k

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edgeR limma RNASeqPower

updated 3.2 years ago by Gordon Smyth 52k • written 4.2 years ago by Ahdee ▴ 60

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Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Answer: Limma trend with limpa by Gordon Smyth 52k

Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Popular Question to James W. MacDonald 68k