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Replies
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
•
0
Hi @yangliao, thanks for the note.
We use Feature Counts extensively for gene-level counting (exon features).
Unfortunately though, and I…
Comment: Feature Counts - potential bug with outfile.jcounts
by
Yang Liao
▴
450
When you use `featureCounts` to count junctions with the `-J` option, it doesn't check if the junction is exactly overlap with exons of gen…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★
4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
swbarnes2
★
1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
•
0
Hi Gordon,
Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
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