Bioconductor Rnaseqrdata

Showing : rnaseqrdata • reset

votes

replies

3.1k

views

RNASeqRData

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by beslinail • 0

votes

replies

2.6k

views

RNASeqRData GO

3.2 years ago Wuschel ▴ 10

vote

replies

2.0k

views

RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Taufiq • 0

vote

replies

1.4k

views

RNASeqRData TPM

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by prashali.bansal ▴ 10

votes

replies

1.1k

views

Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

vote

replies

866

views

RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

votes

854

views

RNASeqRData limma RNASeq RNASeqR

updated 3.0 years ago by Gordon Smyth 50k • written 3.0 years ago by Rita • 0

vote

replies

788

views

microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

vote

775

views

RNASeqRData edgeR RNASeqR RNASeqData

updated 2.1 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

votes

replies

724

views

RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

vote

replies

653

views

find RNASeqRData

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by yuhang • 0

votes

584

views

RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

votes

replies

456

views

RNASeq RNASeqData RNASeqRData

19 months ago marymshahi2021 • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Which input file is used for DGEList in EgdeR? by Michael Love 41k

"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…

Comment: DEG with low counts by Michael Love 41k

These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…

Comment: DESeq filtering specific to contrasts by Michael Love 41k

If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…

Comment: Estimating Cell Counts for EPIC V2 array data by normawiedman059 • 0

0 [103] spam_2.9-1 doParallel_1.0.17 iterators_1.0.14 [106] foreach_1.5.2 beeswarm_0.4.0 tgp_2.4-20 [109] beanplot_1.3.1 fpc_2.2-9 dbscan_1…

Votes

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Awards • All