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root
•
reset
1
vote
0
replies
1.1k
views
Reinstalling failing - Check packages for root user, too
biocinstaller
root
installation
installation problem
6.5 years ago
charles.tilford
▴ 10
0
votes
6
replies
1.6k
views
Xps configuration error on Ubuntu 16.04 despite root being installed
root
xps
TParallelCoord.h
updated 6.8 years ago by
cstrato
★ 3.9k • written 6.8 years ago by
anou
▴ 10
0
votes
5
replies
1.7k
views
xps package - import.expr.scheme help
xps
root
R
affy
updated 7.2 years ago by
cstrato
★ 3.9k • written 7.2 years ago by
jordansquair
• 0
0
votes
3
replies
1.5k
views
Root installation for xps on cluster
xps
root
updated 6.4 years ago by
miles
• 0 • written 8.1 years ago by
Biologist
▴ 110
0
votes
1
reply
1.1k
views
Error in creating scheme (xps package)
xps
root
scheme
probeset
updated 8.2 years ago by
cstrato
★ 3.9k • written 8.2 years ago by
Biologist
▴ 110
0
votes
5
replies
3.2k
views
Problem with xps package and root installation
xps
root
updated 8.9 years ago by
cstrato
★ 3.9k • written 8.9 years ago by
Mari RM
• 0
6 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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