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ropls
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1.7k
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Error in ROPLS with LPS-DA
ROPLS
LPS-DA
6.1 years ago
abigailrandall85
• 0
0
votes
4
replies
998
views
predict.opls() doesn't work when Y is a matrix
ropls
updated 5.8 years ago by
etienne.thevenot
▴ 40 • written 5.8 years ago by
scottericr
• 0
0
votes
4
replies
1.4k
views
HOW to define the "parLabVc" indices in ropls package.
R
ropls
updated 5.9 years ago by
etienne.thevenot
▴ 40 • written 5.9 years ago by
yuan.guo001
• 0
0
votes
1
reply
846
views
ropls package: Recreating scores calculation from an OPLS-DA model
ropls
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
tor.demmers
• 0
1
vote
1
reply
2.6k
views
create S-plots with ropls package
s-plot
ropls
opls-da
rna-seq
updated 2.7 years ago by
Nathalie
▴ 10 • written 3.8 years ago by
andreia
▴ 10
0
votes
1
reply
912
views
How to make OPLS-DA variable importance plot
crlmm
ropls
Metabolomics
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
Charlotte
• 0
5
votes
1
reply
3.1k
views
Data arrangement for PLSDA using the ropls R-package
plsda
ropls
updated 6.6 years ago by
etienne.thevenot
▴ 40 • written 6.6 years ago by
michael.eisenring
▴ 10
0
votes
1
reply
4.8k
views
problem with ropls library (OPLS-DA)
ropls
updated 7.8 years ago by
etienne.thevenot
▴ 40 • written 7.8 years ago by
dominik.guggisberg
• 0
0
votes
1
reply
1.6k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 2.7 years ago by
etienne.thevenot
▴ 40 • written 2.7 years ago by
Fernando
• 0
0
votes
1
reply
568
views
What does it mean when the permI set to different values give the same result
Metabolomics
ropls
updated 16 months ago by
etienne.thevenot
▴ 40 • written 16 months ago by
ansari.maya022
• 0
0
votes
2
replies
711
views
Error received in ropls package
Metabolomics
ropls
updated 17 months ago by
etienne.thevenot
▴ 40 • written 17 months ago by
ansari.maya022
• 0
0
votes
1
reply
1.0k
views
Error with ropls when using oplsda: Error in svd(wwMN) : infinite or missing values in 'x'
ropls
21 months ago
g0079
• 0
0
votes
0
replies
624
views
Orthogonal PLS Regression for multiple response?
ropls
3.7 years ago
guido.guberman
• 0
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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