Bioconductor Roxygen2

Showing : roxygen2 • reset

6

votes

3

replies

3.6k

views

bioccheck roxygen2 warning bioc-devel package development

updated 8.2 years ago by Lluís Revilla Sancho ▴ 760 • written 8.2 years ago by Paul Brennan ▴ 10

3

votes

4

replies

4.1k

views

roxygen2

updated 9.7 years ago by Steve Lianoglou ★ 13k • written 9.7 years ago by b.nota ▴ 370

0

votes

3

replies

3.4k

views

bioconductor package development R roxygen2 warning

8.2 years ago clarisbaby • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Votes

C: ControlGenes/ housekeeping genes Deseq2

Awards • All

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760