Bioconductor Rrbs

Showing : rrbs • reset

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1.0k

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edgeR model-selection RRBS mixture-experiment

3.0 years ago ingerslev • 0

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820

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MethylCC RRBS cord blood

3.8 years ago weichen-cls • 0

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743

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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601

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biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

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2.0k

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edgeR rrbs

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by ingerslev • 0

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2.2k

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methykit rrbs

updated 5.9 years ago by Mike Smith ★ 6.5k • written 5.9 years ago by bekah ▴ 40

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1.5k

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edgeR methyation RRBS

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by osa.zuta ▴ 40

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1.1k

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biseq RRBS betaregression

7.1 years ago l.eijssen • 0

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1.8k

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sva RRBS

updated 7.1 years ago by Jeff Leek ▴ 650 • written 7.1 years ago by mrodrigues.fernanda ▴ 10

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1.7k

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rrbs batch effect methylation sva

updated 7.6 years ago by dashbrook1 • 0 • written 8.7 years ago by GFM ▴ 20

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1.4k

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limma rrbs bsseq

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by nhejazi • 0

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2.0k

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biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Comment: How to retrieve gene ontology GO class? by bandconductor • 0

Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

How am i making the data? I am using the DESeq2 output data which I had generated

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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