Bioconductor Rrbs

Showing : rrbs • reset

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1.0k

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edgeR model-selection RRBS mixture-experiment

3.0 years ago ingerslev • 0

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817

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MethylCC RRBS cord blood

3.7 years ago weichen-cls • 0

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740

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Biseq Methylation DMP DMR RRBS

3.7 years ago i.s.castanho • 0

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598

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biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

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2.0k

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edgeR rrbs

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by ingerslev • 0

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2.2k

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methykit rrbs

updated 5.9 years ago by Mike Smith ★ 6.5k • written 5.9 years ago by bekah ▴ 40

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1.5k

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edgeR methyation RRBS

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by osa.zuta ▴ 40

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1.1k

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biseq RRBS betaregression

7.0 years ago l.eijssen • 0

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1.8k

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sva RRBS

updated 7.1 years ago by Jeff Leek ▴ 650 • written 7.1 years ago by mrodrigues.fernanda ▴ 10

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1.7k

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rrbs batch effect methylation sva

updated 7.5 years ago by dashbrook1 • 0 • written 8.7 years ago by GFM ▴ 20

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1.4k

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limma rrbs bsseq

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.9 years ago by nhejazi • 0

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2.0k

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biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

12 results • Page 1 of 1

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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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