Bioconductor Rrbsdata

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RRBSdata edgeR methylationArrayAnalysis

12 weeks ago Krzysztof • 0

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hiAnnotator bsseq DifferentialMethylation edgeR RRBSdata

16 months ago Mageiros • 0

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DifferentialMethylation RRBSdata edgeR

updated 16 months ago by Gordon Smyth 48k • written 17 months ago by Mageiros • 0

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BatchEffect combat sva edgeR RRBSdata

updated 17 months ago by Gordon Smyth 48k • written 17 months ago by Mageiros • 0

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Answer: How to process Nimblegen microarray .pair files to get normalized expression mat by joris.decosters • 0

Processing NimbleGen .pair files for Drosophila melanogaster 12X135K Gene Expression Array in R involves a different approach compared to A…

Comment: Biostrings error at retrieving protein sequences by James W. MacDonald 63k

It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…

Comment: bug in block.plsda from mixOmics? by Lluís Revilla Sancho ▴ 720

Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.

Answer: Mixed up sample info with plotPCA by Michael Love 40k

I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…

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Answer: Biostrings error at retrieving protein sequences

Answer: How do I merge a list of GRanges?

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar

Comment: DiffBind: dba.plotProfile(profiles)

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