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Comment: Time-course, comparison of two groups
by
boczniak767
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720
Thank you @gordon-smyth . There will be three replicates of each time-series (line x condition). Is it possible to use spline approach and…
Comment: Weird dispersion and volcano plots in DEA with paired samples
by
lara
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0
@mikelove do you mean to color `Pair` with different colors? In our case, we have almost 200 pairs so it's hard to visualize them by colors…
Answer: Time-course, comparison of two groups
by
Gordon Smyth
47k
edgeR allows any number of explanatory factors, so you can have time-series for any number of treatments.
If you have replicates, then I w…
Comment: different number of DEG because of outliers
by
Pedro Baldoni
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30
The function `catchKallisto` in edgeR reads in the output from kallisto and estimates the mapping ambiguity overdispersion similarly
Comment: How to compute(calculate) rlog and vst provided from DESeq2
by
tstpp
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0
Thank you for your kind reply!
I try to understand them.
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