Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rsamtools
•
reset
0
votes
11
replies
2.1k
views
Rsubread/Rsamtools mappings outside of chromosome ranges
PROcess
Rsamtools
Rsubread
TCC
PROcess
Rsamtools
Rsubread
TCC
12.2 years ago
Thomas Girke
★ 1.7k
0
votes
13
replies
2.3k
views
readGAlignments + BamViews not working in BioC-Devel
genomicalignments
rsamtools
8.8 years ago
Arne Muller
▴ 20
3
votes
12
replies
2.4k
views
Error installing cn.mops and Rsamtools in R 3.1.3
rsamtools
cn.mops
installation
9.0 years ago
Spollen, William G.
▴ 30
1
vote
4
replies
2.2k
views
How to find the end position of a read?
rsamtools
alignment
cigar
6.8 years ago
Frocha
▴ 20
4
votes
4
replies
2.4k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup
rsamtools
bam
genomicalignments
updated 8.8 years ago by
Nathaniel Hayden
▴ 180 • written 8.9 years ago by
Sam Buckberry
• 0
2
votes
4
replies
1.5k
views
10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
Rsamtools
Rsubread
updated 14 months ago by
Gordon Smyth
50k • written 14 months ago by
Christopher
• 0
0
votes
4
replies
1.3k
views
pileup function not found (Rsamtools)
rsamtools
pileup
7.5 years ago
oscar puig
• 0
6
votes
5
replies
3.4k
views
Extracting Sequences from Fasta Files with Rsamtools
Rsamtools
updated 3.5 years ago by
Martin Morgan
25k • written 3.9 years ago by
jlee
▴ 20
0
votes
5
replies
1.2k
views
Rsamtools from biocLite using R-devel
Rsamtools
Rsamtools
updated 13.5 years ago by
Paul Leo
▴ 970 • written 13.5 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
6
replies
2.2k
views
Rsamtools installation
Rsamtools
Rsamtools
updated 12.5 years ago by
James W. MacDonald
65k • written 12.5 years ago by
John Coulthard
▴ 170
0
votes
2
replies
1.1k
views
Rsamtools ScanFA error
rsamtools
6.4 years ago
andreag1987
• 0
0
votes
4
replies
1.5k
views
problem in reading bam files with EDASeq
Rsamtools
EDASeq
ASSIGN
Rsamtools
EDASeq
ASSIGN
updated 12.2 years ago by
davide risso
▴ 950 • written 12.3 years ago by
rcaloger
▴ 500
0
votes
7
replies
2.8k
views
VariantAnnotation: Performance and memory issues in readVcf
VariantAnnotation
PROcess
Rsamtools
VariantAnnotation
VariantAnnotation
PROcess
Rsamtools
updated 10.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.9 years ago by
UBod
▴ 290
5
votes
9
replies
2.2k
views
Reading alignments above a mapq threshold from BAM files
rsamtools
bam
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Johannes Rainer
★ 2.0k
9
votes
32
replies
5.9k
views
Rsamtools v 1.99.6 installation error
Rsamtools
BiocManager
R 3.6
ubuntu
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
kubovcij
• 0
1
vote
2
replies
1.7k
views
scanBam with ScanBamParam argument which specified ignores yieldSize. Intentionally?
scanbam
scanbamparam
rsamtools
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Johannes Rainer
★ 2.0k
8
votes
3
replies
1.4k
views
Counting ambiguously mapped reads per feature
rnaseq
bam
genomicranges
GenomicAlignments
Rsamtools
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
rubi
▴ 110
1
vote
2
replies
1.3k
views
Rsamtools and dbnsfp
bioconductor
rsamtools
annotation
variantannotation
8.8 years ago
jhomsy
• 0
5
votes
15
replies
1.7k
views
scanBam and countBam end prematurely under Windows 10
Rsamtools
updated 4.6 years ago by
Hervé Pagès
16k • written 4.6 years ago by
Gordon Smyth
50k
0
votes
5
replies
1.3k
views
Error Raised When Trying To Use pileup()
hilbertvis
rsamtools
shortread
biostrings
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
travis.m.couture
• 0
5
votes
6
replies
2.3k
views
extracting Allele Read Counts
rsamtools
vcf
7.0 years ago
Bogdan
▴ 670
3
votes
2
replies
2.0k
views
Rsamtools use for R version 3.4.1
rsamtools
package installation
samtools
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
rbronste
▴ 60
0
votes
6
replies
1.7k
views
Problem installing Rsamtools
Rsamtools
Rsamtools
12.6 years ago
Kathryn Iverson
▴ 30
0
votes
3
replies
1.4k
views
Rsamtools installation
GO
Rsamtools
GO
Rsamtools
updated 12.1 years ago by
Martin Morgan
25k • written 12.1 years ago by
Bruce Hayward
▴ 40
0
votes
4
replies
3.8k
views
reading BAM files
Rsamtools
Rsamtools
updated 11.4 years ago by
James W. MacDonald
65k • written 11.4 years ago by
Hermann Norpois
▴ 110
1
vote
2
replies
2.2k
views
Processing bam files by read group
rsamtools
read group
bam
updated 9.3 years ago by
Nathaniel Hayden
▴ 180 • written 9.5 years ago by
Thomas Sandmann
▴ 90
0
votes
2
replies
1.2k
views
error from rsamtools on 1000 genomes
Cancer
HapMap
Rsamtools
genomes
Cancer
HapMap
Rsamtools
genomes
updated 13.8 years ago by
Martin Morgan
25k • written 13.8 years ago by
Sergii Ivakhno
▴ 100
2
votes
4
replies
2.9k
views
getSeq{BSgenome} error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
rsamtools
8.3 years ago
komal.rathi
▴ 120
0
votes
6
replies
2.0k
views
Advice on reading big BED/BAM and ChIP-seq quality control
GO
rtracklayer
Rsamtools
GO
rtracklayer
Rsamtools
updated 10.9 years ago by
Michael Stadler
▴ 350 • written 10.9 years ago by
Hari Easwaran
▴ 240
4
votes
5
replies
2.2k
views
scanBam on BamSampler supposed to be fast?
rsamtools
bam
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
Johannes Rainer
★ 2.0k
0
votes
4
replies
1.1k
views
Is there support for tag type 'B' in Rsamtools?
rsamtools
software error
8.5 years ago
obanerjee
• 0
0
votes
6
replies
1.2k
views
wishlist for readGappedAlignments
GenomicRanges
Rsamtools
GenomicRanges
Rsamtools
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Tengfei Yin
▴ 420
0
votes
2
replies
2.5k
views
How to access custom SAM tags (Rsamtools?)
Rsamtools
Rsamtools
updated 11.4 years ago by
delhomme@embl.de
★ 1.2k • written 11.4 years ago by
Kemal Akman
▴ 20
0
votes
2
replies
1.5k
views
[devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtools?
Coverage
Cancer
Rsamtools
Coverage
Cancer
Rsamtools
updated 11.2 years ago by
Renjie Tan
▴ 10 • written 11.2 years ago by
Martin Morgan
25k
4
votes
4
replies
3.3k
views
Best way to handle tags of bam files
GenomicAlignments
bam
Rsamtools
written 3.1 years ago by
changxu.fan
▴ 20
0
votes
8
replies
3.6k
views
Rsamtools installation error
Rsamtools
Rsamtools
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Rsamtools: Read a bam line by line
GO
Rsamtools
GO
Rsamtools
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Alex Gutteridge
▴ 650
0
votes
1
reply
830
views
Accessing next gen sequence data remotely via biocondcutor
Sequencing
Rsamtools
Sequencing
Rsamtools
updated 13.3 years ago by
Martin Morgan
25k • written 13.3 years ago by
Ruppert Valentino
▴ 270
0
votes
1
reply
1.5k
views
Using readBAM function in segmentSeq
GO
Rsamtools
GO
Rsamtools
updated 11.8 years ago by
Thomas J Hardcastle
▴ 180 • written 11.8 years ago by
james perkins
▴ 300
0
votes
1
reply
953
views
Rsamtools: scanBamFlag bug?
Rsamtools
Rsamtools
updated 11.9 years ago by
Martin Morgan
25k • written 11.9 years ago by
Nuno Fonseca
▴ 10
0
votes
3
replies
1.1k
views
Rsamtools Error: vector of negative length
Rsamtools
Rsamtools
updated 13.5 years ago by
Martin Morgan
25k • written 13.5 years ago by
Christoph Bartenhagen
▴ 40
0
votes
1
reply
2.8k
views
Import Bam index (Rsamtools)
Proteomics
Rsamtools
Proteomics
Rsamtools
updated 12.0 years ago by
Martin Morgan
25k • written 12.0 years ago by
Francesco Mancuso
▴ 110
0
votes
2
replies
1.7k
views
Rsamtools installation error
ShortRead
Rsamtools
ShortRead
Rsamtools
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
Wolfgang Raffelsberger
▴ 60
0
votes
1
reply
849
views
[devteam-bioc] Depth of Coverage and Base counts from BAM file
Coverage
Cancer
Rsamtools
Coverage
Cancer
Rsamtools
10.6 years ago
Hervé Pagès
16k
0
votes
1
reply
3.5k
views
writing BAM files from within R
convert
Rsamtools
convert
Rsamtools
updated 12.2 years ago by
Valerie Obenchain
★ 6.8k • written 12.2 years ago by
margherita mutarelli
▴ 10
0
votes
7
replies
1.1k
views
Rsamtools from biocLite using R-devel
Rsamtools
Rsamtools
updated 13.5 years ago by
Martin Morgan
25k • written 13.5 years ago by
Kasper Daniel Hansen
★ 6.5k
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Robert
▴ 10
0
votes
2
replies
1.6k
views
Rsamtools: scan all optional tags that exists in my bam file
Rsamtools
Rsamtools
updated 2.1 years ago by
Marcel Ramos
690 • written 10.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Rsamtools installation error
Rsamtools
Rsamtools
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
nishant thakur
▴ 10
0
votes
5
replies
1.9k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO
BSgenome
BSgenome
Rsamtools
genomes
MEDIPS
GO
BSgenome
BSgenome
Rsamtools
genomes
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
Vining, Kelly
▴ 220
50 results • Page
1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Locations
• All
France,
19 minutes ago
The city by the bay,
20 minutes ago
United States,
2 hours ago
WEHI, Melbourne, Australia,
2 hours ago
Vietnam,
2 hours ago
Traffic: 468 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6