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rsubread
•
reset
1
vote
21
replies
3.4k
views
Rsubread stopping half-way through align
rsubread
7.8 years ago • updated 7.7 years ago
Campbell.1933
• 0
7
votes
28
replies
6.1k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 11 weeks ago by
Gordon Smyth
50k • written 9.1 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
10
replies
2.5k
views
Rsubread on Cygwin - error due to gcc ... -D MACOS - why?
Rsubread
updated 7.7 years ago by
Wei Shi
★ 3.6k • written 7.8 years ago by
MWSchmid
• 0
0
votes
11
replies
2.1k
views
Rsubread/Rsamtools mappings outside of chromosome ranges
PROcess
Rsamtools
Rsubread
TCC
PROcess
Rsamtools
Rsubread
TCC
12.2 years ago
Thomas Girke
★ 1.7k
0
votes
5
replies
1.7k
views
Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation
GO
BSgenome
cdf
BSgenome
Rsubread
Annotation
GO
BSgenome
cdf
BSgenome
10.7 years ago
Alan Smith
▴ 150
2
votes
6
replies
2.5k
views
Install Rsubread in win10, failed, how to proceed?
rsubread
windows10
rtools
updated 4.6 years ago by
Yang Liao
▴ 380 • written 6.8 years ago by
Yisong Zhen
▴ 200
3
votes
8
replies
7.1k
views
Reads in Unassigned_NoFeatures category produced by featureCounts
rsubread
updated 8.1 years ago by
Wei Shi
★ 3.6k • written 8.1 years ago by
Likai Mao
▴ 40
4
votes
3
replies
4.6k
views
Please, could someone help me to export featureCounts (Rsubread) results?
rnaseq
rsubread
featurecounts
r
9.5 years ago
gustavoborin01
• 0
2
votes
4
replies
1.5k
views
10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
Rsamtools
Rsubread
updated 14 months ago by
Gordon Smyth
50k • written 14 months ago by
Christopher
• 0
0
votes
5
replies
1.6k
views
Rsubread crash on Mac during alignment
software error
rsubread
7.2 years ago • updated 6.9 years ago
raf4
▴ 20
3
votes
3
replies
4.0k
views
Rsubreads - featureCount - gtf - error
rsubread
featurecounts
9.2 years ago
samuel collombet
▴ 140
1
vote
11
replies
2.5k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread
BWA
NGS
updated 7.6 years ago by
Wei Shi
★ 3.6k • written 7.6 years ago by
tarek.mohamed
▴ 10
1
vote
3
replies
2.0k
views
Error using RSubread to buildIndex with large Fasta
rsubread
updated 9.1 years ago by
Wei Shi
★ 3.6k • written 9.1 years ago by
beiting
▴ 30
6
votes
3
replies
2.1k
views
Possible bug in Rsubread Phred-Score read
rsubread
bug
alignment
updated 9.4 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
caufeminecraft
▴ 20
0
votes
15
replies
2.9k
views
Rsubread crashes in 32bit linux
Yeast
Rsubread
Yeast
Rsubread
updated 11.9 years ago by
Wei Shi
★ 3.6k • written 11.9 years ago by
Robert Castelo
★ 3.3k
0
votes
5
replies
1.8k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.4 years ago • updated 10.3 years ago
Thomas Girke
★ 1.7k
12
votes
7
replies
1.9k
views
No method for coercing this S4 class to a vector, as trying to import my own data rather than using SRA in the workflow RnaSeqGeneEdgeRQL
rnaseqgeneedgerql
shortread
Rsubread
updated 5.0 years ago by
Aspie96
▴ 60 • written 5.1 years ago by
Raito92
▴ 60
9
votes
16
replies
2.8k
views
Rsubread install fails, "unable to load shared object Rsubread.so"
rsubread
5.9 years ago
jet456
▴ 10
2
votes
3
replies
664
views
Rsubread: subjunc() loads index repeatedly
Rsubread
9 months ago • updated 8 months ago
Gerhard Thallinger
▴ 180
1
vote
5
replies
1.3k
views
Case Studies Data Missing in Rsubread
Rsubread
updated 12 months ago by
Gordon Smyth
50k • written 24 months ago by
J-E
• 0
2
votes
2
replies
1.8k
views
Error when loading annotation featureCounts
featureCounts
Rsubread
subread
CellBiology
updated 3.1 years ago by
Yang Liao
▴ 380 • written 3.1 years ago by
Jason
• 0
1
vote
2
replies
249
views
Problems with Feature counting
Rsubread
BAMfiles
GTFfile
3 months ago
mirjanakessler
• 0
2
votes
3
replies
899
views
Rsubread CIGAR output M only?
Rsubread
cigar
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
lauren.fitch
• 0
1
vote
3
replies
1.4k
views
Killed 9 on macOS Mojave for Rsubread buildindex
Rsubread
buildindex
killed 9
Mojave
updated 4.8 years ago by
Wei Shi
★ 3.6k • written 4.9 years ago by
raabec
• 0
7
votes
5
replies
3.8k
views
featureCounts returning a matrix of counts full of 0...
featureCounts
rnaseq
Rsubread
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Raito92
▴ 60
4
votes
10
replies
5.2k
views
Finding gene lengths of mm10 to calculate rpkm from count matrix of rna-seq dataset
rpkm
gene length
count matrix
edgeR
rsubread
8.5 years ago
AB
▴ 110
2
votes
8
replies
2.8k
views
Unassigned reads in Rsubread FeatureCounts
Rsubread
updated 24 months ago by
Robert Castelo
★ 3.3k • written 4.0 years ago by
am39
• 0
5
votes
11
replies
1.5k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error
Rsubread
updated 3.8 years ago by
Gordon Smyth
50k • written 3.8 years ago by
barrel0luck
• 0
4
votes
3
replies
4.3k
views
Rsubread, Error in featureCounts paired end
Rsubread
paired end
featureCounts
updated 4.8 years ago by
Wei Shi
★ 3.6k • written 4.8 years ago by
hauken_heyken
▴ 80
0
votes
2
replies
1.7k
views
Rsubread featureCounts segmentation fault with lots of read groups
Rsubread
updated 2.5 years ago by
Yang Liao
▴ 380 • written 2.5 years ago by
mruffalo
• 0
2
votes
6
replies
2.5k
views
featureCount error - cannot identify gene_id
dexseq
rsubread
featureCount
software error
updated 4.4 years ago by
Yang Liao
▴ 380 • written 4.4 years ago by
seung.ho.steven.choi
• 0
13
votes
20
replies
3.5k
views
cellCounts() function floating point error
Rsubread
23 months ago • updated 21 months ago
J-E
• 0
7
votes
4
replies
6.9k
views
Low percentage of assigned fragments with FeatureCounts
rsubread
featurecounts
rnaseq
9.0 years ago
beiting
▴ 30
1
vote
4
replies
1.7k
views
problem of getting count matrix in featurecounts of Rsubread package
rnaseq
rsubread
featurecounts
updated 6.2 years ago by
Wei Shi
★ 3.6k • written 6.2 years ago by
mmurshed
• 0
0
votes
4
replies
1.1k
views
Is circular RNA read out as linear fragments during Rsubread-DESeq2
deseq2
circrna
rsubread
updated 5.8 years ago by
Wei Shi
★ 3.6k • written 5.9 years ago by
csijst
• 0
0
votes
2
replies
2.5k
views
counting RNA-seq reads in R/BioC
GO
Infrastructure
Rsubread
easyRNASeq
GO
Infrastructure
Rsubread
easyRNASeq
updated 11.6 years ago by
Valerie Obenchain
★ 6.8k • written 11.6 years ago by
Mark Robinson
▴ 880
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.4 years ago
Wei Shi
★ 3.6k
1
vote
2
replies
1.7k
views
Rsubread package not available?
Rsubread
BiocInstaller
updated 4.7 years ago by
Gordon Smyth
50k • written 12.4 years ago by
Noah Dowell
▴ 410
6
votes
5
replies
2.4k
views
reads alignment statistics
rsubread
bioconductor
updated 6.6 years ago by
Hervé Pagès
16k • written 6.6 years ago by
C T
▴ 140
4
votes
7
replies
5.9k
views
convert featureCounts's gene ID to entrez gene id
biomart
rsubread
gencode
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
YinCY
▴ 20
0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.5 years ago by
Wei Shi
★ 3.6k • written 7.5 years ago by
jan.soderman
• 0
1
vote
3
replies
3.5k
views
rsubread featurecounts returns 0% successfully assigned reads
rsubread
updated 8.7 years ago by
amoltej
▴ 10 • written 9.2 years ago by
ross.chapman
▴ 10
1
vote
10
replies
5.0k
views
Rsubread package not available? Warning resolved
affxparser
Rsubread
BiocInstaller
affxparser
Rsubread
BiocInstaller
updated 12.4 years ago by
Wei Shi
★ 3.6k • written 12.4 years ago by
NDowell
▴ 20
0
votes
8
replies
2.0k
views
Rsubread alingner
Alignment
Yeast
Rsubread
Alignment
Yeast
Rsubread
13.0 years ago
Wei Shi
★ 3.6k
3
votes
4
replies
1.5k
views
Error message when trying to use the 'Align' function of the 'Rsubread' package
rsubread
rnaseq
alignment
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
thomas.dobrenel
• 0
3
votes
3
replies
5.2k
views
Run featureCounts in isoform/transcript level in Rsubread
rsubread
updated 8.1 years ago by
Wei Shi
★ 3.6k • written 8.2 years ago by
Likai Mao
▴ 40
3
votes
5
replies
5.6k
views
Problem while installing Rsubread
installation
rsubread
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
jackeikee
• 0
2
votes
9
replies
1.7k
views
countPrimaryAlignmentsOnly=TRUE produced more counts
rsubread
updated 8.2 years ago by
Wei Shi
★ 3.6k • written 8.2 years ago by
Likai Mao
▴ 40
3
votes
7
replies
1.9k
views
Rsubread inbuilt annotation
rsubread
featureCounts
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
diego.carvalhoalvarez
• 0
3
votes
4
replies
961
views
Featurecount -- normalized Path error
path
Rsubread
updated 5.2 years ago by
cellfixnowusa
• 0 • written 5.3 years ago by
memoly101
• 0
50 results • Page
1 of 1
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