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rsubread
•
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0
votes
2
replies
218
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
19 days ago • updated 16 hours ago
isaac.vock
• 0
2
votes
2
replies
1.6k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread
featurecounts
summarizeoverlaps
updated 19 days ago by
isaac.vock
• 0 • written 7.8 years ago by
Jon Manning
▴ 90
2
votes
3
replies
225
views
Rsubread crashes Rstudio while alignment
Rsubjunc
Rsubread
updated 24 days ago by
Wei Shi
★ 3.6k • written 25 days ago by
thomas.heigl.ibk
• 0
0
votes
1
reply
163
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 4 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
125
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts
Rsubread
6 weeks ago
chris2.a.white
• 0
1
vote
1
reply
239
views
featureCounts unable to assign long reads to one specific isoform
featureCounts
Rsubread
updated 6 weeks ago by
Wei Shi
★ 3.6k • written 10 weeks ago by
Alex
• 0
1
vote
1
reply
366
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 6 weeks ago by
Yang Liao
▴ 380 • written 11 weeks ago by
Joe Marturano
▴ 10
0
votes
0
replies
141
views
Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
7 weeks ago
thomas.heigl.ibk
• 0
7
votes
28
replies
6.1k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 10 weeks ago by
Gordon Smyth
50k • written 9.1 years ago by
Ryan C. Thompson
★ 7.9k
4
votes
6
replies
727
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts
Rsubread
12 weeks ago • updated 11 weeks ago
isaac.vock
• 0
0
votes
4
replies
405
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts
Rsubread
updated 11 weeks ago by
Gordon Smyth
50k • written 11 weeks ago by
tjgray4
• 0
1
vote
2
replies
243
views
Problems with Feature counting
Rsubread
BAMfiles
GTFfile
12 weeks ago
mirjanakessler
• 0
0
votes
1
reply
310
views
Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
glopez
• 0
2
votes
2
replies
534
views
Long-read mode in featureCounts
Rsubread
LongRead
6 months ago
mmisak
• 0
0
votes
2
replies
1.2k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
6 months ago
Gregory
• 0
0
votes
0
replies
275
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
6 months ago
kthapa
• 0
0
votes
2
replies
495
views
Rsubread: .bai file lacks data for `samtools idxstats`
Rsubread
7 months ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
303
views
Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
Cosmin Saveanu
• 0
2
votes
3
replies
661
views
Rsubread: subjunc() loads index repeatedly
Rsubread
9 months ago • updated 8 months ago
Gerhard Thallinger
▴ 180
0
votes
2
replies
578
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 8 months ago by
Wei Shi
★ 3.6k • written 8 months ago by
amanda.gutierrez
• 0
0
votes
2
replies
985
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
vitoriastavis
• 0
0
votes
1
reply
469
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread
ensembldb
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Ya
• 0
1
vote
6
replies
1.8k
views
Rsubread - Error on buildindex - big ref sequence
Rsubread
updated 8 months ago by
Yang Liao
▴ 380 • written 4.1 years ago by
bryan.penning
• 0
1
vote
1
reply
644
views
featureCounts bug with unpaired reads
Rsubread
featureCounts
updated 9 months ago by
Yang Liao
▴ 380 • written 9 months ago by
StevenE.Strong
• 0
0
votes
2
replies
560
views
'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
Sukeerthi
• 0
3
votes
16
replies
18k
views
featureCounts - paired-end data
featurecounts
rsubread
updated 10 months ago by
Robert
• 0 • written 8.9 years ago by
samuel collombet
▴ 140
0
votes
1
reply
843
views
Potential segfault bug in featureCounts using long read data
Bioconductor
Rsubread
featureCounts
updated 11 months ago by
Wei Shi
★ 3.6k • written 11 months ago by
Carlos
• 0
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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
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• 0
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Gordon Smyth
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