Bioconductor Rtandem

Showing : rtandem • reset

0

votes

0

replies

124

views

peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 4 months ago by shepherl 3.5k • written 4 months ago by vaddanki • 0

1

vote

1

reply

812

views

rtandem bug compilation error

5.0 years ago Ed Siefker ▴ 230

0

votes

0

replies

788

views

Proteomics trigger rTANDEM Proteomics trigger rTANDEM

10.4 years ago Frederic Fournier ▴ 40

2

votes

3

replies

994

views

Proteomics rTANDEM Proteomics rTANDEM

updated 10.5 years ago by Steve Lianoglou 13k • written 10.5 years ago by Frederic Fournier ▴ 40

4 results • Page 1 of 1

Recent ...

Replies

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50

answered in Biostars: https://www.biostars.org/p/9564943/

Comment: Multitasking and Rbwa by Jean-Philippe Fortin • 0

Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…

Comment: biomaRt error: database disk image is malformed by Emile • 0

UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…

Answer: Proteomics data with NA values by Laurent Gatto 1.6k

- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …

Votes

Answer: Question on constructing design matrix and defining contrasts for analysis

WGCNA: many over and under-expressed features in modules of a signed network

Comment: WGCNA: many over and under-expressed features in modules of a signed network

Answer: DESeq2 or edgeR for Presence and Absence of Proteins

Answer: Normalized counts from LRT or Wald test?

Awards • All

Teacher to James W. MacDonald 63k