Bioconductor Rtracklayer

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rtracklayer

written 5 weeks ago by Aichatou • 0

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436

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UCSC rtracklayer getTable

3 months ago Andreas.Herbst • 0

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553

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goseq Bioconductor rtracklayer

10 months ago thomas • 0

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1.4k

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newpackage rtracklayer

updated 10 months ago by shepherl 4.1k • written 10 months ago by Lucille • 0

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8.4k

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GRanges bedpe structural variants rtracklayer

written 8.9 years ago by tangming2005 ▴ 200

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3.1k

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ENmix Bioconductor rtracklayer

written 3.9 years ago by lea • 0

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4.1k

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genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer

updated 8 weeks ago by rania.alanany • 0 • written 4.8 years ago by Biologist ▴ 120

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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

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Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

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Commentator to Michael Love 43k