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rtracklayer
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1
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
6 weeks ago
thomas
• 0
0
votes
4
replies
293
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage
rtracklayer
updated 8 weeks ago by
shepherl
3.8k • written 8 weeks ago by
Lucille
• 0
9
votes
38
replies
6.7k
views
manipulate bedpe format files
GRanges
bedpe
structural variants
rtracklayer
written 8.2 years ago by
tangming2005
▴ 190
2
votes
7
replies
472
views
distanceToNearest
rtracklayer
ranges
distanceToNearest
3 months ago
robjohn70000
• 0
1
vote
0
replies
420
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
5 months ago
yujin
▴ 10
1
vote
3
replies
579
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 5 months ago by
Hervé Pagès
16k • written 5 months ago by
yujin
▴ 10
1
vote
1
reply
443
views
rtracklayer error for browserSession UCSC
rtracklayer
updated 6 months ago by
Hervé Pagès
16k • written 6 months ago by
Anna
▴ 10
0
votes
21
replies
2.4k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.1 years ago by
lea
• 0
8 results • Page
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Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★ 4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Votes
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
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