Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rtracklayer
•
reset
9
votes
38
replies
8.4k
views
manipulate bedpe format files
GRanges
bedpe
structural variants
rtracklayer
written 8.9 years ago by
tangming2005
▴ 200
28
votes
25
replies
6.4k
views
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
Gviz
rtracklayer
updated 7.5 years ago by
aina.jene
▴ 10 • written 7.9 years ago by
Ramiro Magno
▴ 100
0
votes
18
replies
3.1k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.9 years ago by
lea
• 0
7
votes
16
replies
4.1k
views
How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores
granges
phastCons100way.UCSC.hg38
r
rtracklayer
updated 9 weeks ago by
rania.alanany
• 0 • written 4.8 years ago by
Biologist
▴ 120
3
votes
15
replies
3.5k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
14
replies
2.9k
views
Genome Browser and R
rtracklayer
rtracklayer
11.2 years ago
khadeeja ismail
▴ 400
0
votes
12
replies
3.2k
views
how to use rtracklayer to retrieve sequence of list of coordinates
rtracklayer
rtracklayer
updated 14.9 years ago by
Steve Lianoglou
★ 13k • written 14.9 years ago by
sabrina.shao
▴ 220
1
vote
12
replies
6.3k
views
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
software error
rtracklayer
bioconductor
openssl
6.1 years ago
ruan_wei_dong
• 0
1
vote
10
replies
2.5k
views
rtracklayer export bedGraph cannot be loaded into UCSC
rtracklayer
updated 6.4 years ago by
Michael Lawrence
★ 11k • written 6.4 years ago by
Nicolas Servant
▴ 260
1
vote
10
replies
2.3k
views
UCSC web service API
txdb.hsapiens.ucsc.hg19.knowngene
rtracklayer
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
Asma rabe
▴ 290
2
votes
10
replies
2.9k
views
tracklayer - browserSession() Infinite Recursion Error
rtracklayer
ucsc
9.6 years ago
andrew.j.skelton73
▴ 370
4
votes
9
replies
5.1k
views
Is it possible to read bigwig files with rtracklayer over https? Comes down to GenomeInfoDb::seqinfo()
rtracklayer
genomeinfodb
8.7 years ago
Leonardo Collado Torres
★ 1.1k
9
votes
9
replies
6.0k
views
Importing a BED file with floating point scores?
rtracklayer
bed
updated 3.9 years ago by
merv
▴ 140 • written 8.8 years ago by
Ryan C. Thompson
★ 7.9k
5
votes
9
replies
4.4k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC
bsgenome
phastcons
rtracklayer
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
crysis405
▴ 10
3
votes
9
replies
2.6k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 9.0 years ago by
laurent.lacroix
▴ 30 • written 9.0 years ago by
koneill
▴ 30
2
votes
8
replies
4.1k
views
Unable to load/install rtracklayer (v1.33.2) on OS X (possibly SSL-related?)
rtracklayer
bioc-devel
ssl
openssl
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
Peter Hickey
▴ 740
0
votes
8
replies
2.4k
views
rtracklayer bigWig import fails with "'ranges' must have the length of the object to construct"
rtracklayer
updated 2.3 years ago by
Ruoyun
• 0 • written 2.5 years ago by
bonob
• 0
2
votes
8
replies
4.5k
views
"minfi" loading problem because of couldn't "bumphunter" load
bumphunter
minfi
loading error
rtracklayer
updated 7.7 years ago by
nilan666
• 0 • written 7.7 years ago by
juan-pablo.cerapio-arroyo
▴ 10
0
votes
8
replies
3.6k
views
views on Rle using GRanges object
RNASeq
Coverage
GO
rtracklayer
RNASeq
Coverage
GO
rtracklayer
updated 13.4 years ago by
Hervé Pagès
16k • written 13.4 years ago by
Janet Young
▴ 740
2
votes
7
replies
982
views
distanceToNearest
rtracklayer
ranges
distanceToNearest
12 months ago
robjohn70000
• 0
2
votes
7
replies
1.4k
views
How to set track attributes in rtracklayer
rtracklayer
browserView
browserSession
updated 5.9 years ago by
Michael Lawrence
★ 11k • written 5.9 years ago by
foehn
▴ 100
0
votes
7
replies
1.7k
views
export Views of Rle in rtracklayer
Coverage
rtracklayer
Coverage
rtracklayer
updated 13.2 years ago by
Michael Lawrence
★ 11k • written 13.2 years ago by
jason0701
▴ 190
0
votes
7
replies
1.8k
views
read gz compressed wig files?
Cancer
rtracklayer
Cancer
rtracklayer
updated 13.8 years ago by
Steve Lianoglou
★ 13k • written 13.8 years ago by
Hamid Bolouri
▴ 50
0
votes
7
replies
1.5k
views
rtracklayer cannot export empty BED file
rtracklayer
bed
genomicranges
updated 6.2 years ago by
Michael Lawrence
★ 11k • written 6.2 years ago by
foehn
▴ 100
6
votes
7
replies
3.3k
views
Error: Failed to set session genome to...
gviz
rtracklayer
updated 9.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.7 years ago by
liz.ingsimmons
▴ 140
0
votes
6
replies
2.3k
views
Advice on reading big BED/BAM and ChIP-seq quality control
GO
rtracklayer
Rsamtools
GO
rtracklayer
Rsamtools
updated 11.7 years ago by
Michael Stadler
▴ 350 • written 11.7 years ago by
Hari Easwaran
▴ 240
1
vote
6
replies
1.7k
views
"rtracklayer" compilation error
rtracklayer
updated 8.5 years ago by
Mike Smith
★ 6.6k • written 8.5 years ago by
Biologist
▴ 120
0
votes
6
replies
2.2k
views
rtracklayer issue: Tracks don't show up
rtracklayer
bug
session
updated 9.8 years ago by
Michael Lawrence
★ 11k • written 9.8 years ago by
chrarnold
• 0
0
votes
6
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.7 years ago by
Robert Ivanek
▴ 750 • written 11.7 years ago by
Guest User
★ 13k
0
votes
6
replies
1.7k
views
load failed for 'Rlibstree'
hgu133plus2
rtracklayer
hgu133plus2
rtracklayer
updated 14.8 years ago by
Seth Falcon
★ 7.4k • written 14.8 years ago by
Paul Shannon
★ 1.1k
0
votes
6
replies
1.3k
views
rtracklayer laying a track
rtracklayer
rtracklayer
updated 13.0 years ago by
Michael Lawrence
★ 11k • written 13.0 years ago by
Guest User
★ 13k
2
votes
6
replies
2.7k
views
rtracklayer: error in importing bigwig file in r in windows
rtracklayer
bigwig file
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.9 years ago by
mzwanelen
▴ 10
3
votes
6
replies
2.2k
views
Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length as the vector [209]
rtracklayer
ucsc
ensgene
updated 6.7 years ago by
max
▴ 10 • written 6.7 years ago by
chrisamiller
• 0
0
votes
6
replies
2.5k
views
Add columns to granges object that sum score around range
R
Grang
r
granges
rtracklayer
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
ssabri
▴ 20
0
votes
6
replies
1.8k
views
GenomicFeatures: makeTranscriptDbFromUCSC on "refGene" supported?
rtracklayer
GenomicFeatures
rtracklayer
GenomicFeatures
updated 14.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.5 years ago by
Erik van den Akker
▴ 50
0
votes
6
replies
1.7k
views
rtracklayer: Problems running vignette
rtracklayer
rtracklayer
updated 15.6 years ago by
Michael Lawrence
▴ 620 • written 15.6 years ago by
Simon Anders
▴ 150
2
votes
6
replies
3.3k
views
[rtracklayer] Error in .local(con, format, text, ...) : unused argument (asRangedData = FALSE)
software error
rtracklayer
updated 9.0 years ago by
Michael Lawrence
★ 11k • written 9.0 years ago by
Darya Vanichkina
▴ 130
0
votes
6
replies
2.9k
views
Problem with importing bigwig files generated in galaxy into R
import.bw
rtracklayer
updated 9.7 years ago by
Michael Lawrence
★ 11k • written 9.7 years ago by
d r
▴ 150
0
votes
5
replies
1.9k
views
BED15 format for rtracklayer
Microarray
Visualization
rtracklayer
Microarray
Visualization
rtracklayer
updated 15.5 years ago by
Michael Lawrence
▴ 620 • written 15.5 years ago by
rcaloger
▴ 500
0
votes
5
replies
3.1k
views
Rtracklayer not able to set session genome to mm9 using US server. hg19 and european server are working
rtracklayer
mm9
ucsc
updated 8.5 years ago by
Martin Morgan
25k • written 9.7 years ago by
krijgerp
• 0
0
votes
5
replies
609
views
Help using rtracklayer for gene ID extraction
rtracklayer
written 5 weeks ago by
Aichatou
• 0
0
votes
5
replies
1.4k
views
rtracklayer error?
Cancer
rtracklayer
Cancer
rtracklayer
11.5 years ago
Janet Young
▴ 740
5
votes
5
replies
4.2k
views
Issues with installation status of R package rtracklayer
rtracklayer
Bioconductor
updated 2.9 years ago by
shepherl
4.1k • written 4.0 years ago by
svlachavas
▴ 840
0
votes
5
replies
2.5k
views
bigBed support in rtracklayer
rtracklayer
rtracklayer
updated 8.6 years ago by
koneill
▴ 30 • written 12.1 years ago by
Tim Triche
★ 4.2k
0
votes
5
replies
1.4k
views
rtracklayer export fails
rtracklayer
rtracklayer
updated 13.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.9 years ago by
Michael Dondrup
▴ 550
8
votes
5
replies
2.9k
views
import wig to coverage
rtracklayer
granges
import.wig
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
liz.ingsimmons
▴ 140
0
votes
5
replies
1.8k
views
Finding my un-counted reads
Sequencing
rtracklayer
ShortRead
GenomicRanges
Sequencing
rtracklayer
ShortRead
updated 11.4 years ago by
Valerie Obenchain
★ 6.8k • written 11.4 years ago by
Sam McInturf
▴ 300
0
votes
5
replies
1.9k
views
How to plot microRNA chromosome location
miRNA
ideogram
GenomeGraphs
rtracklayer
microRNA
miRNA
ideogram
GenomeGraphs
rtracklayer
updated 16.2 years ago by
Camper Chih-Wei Liu
▴ 40 • written 16.2 years ago by
Michael Lawrence
▴ 620
1
vote
5
replies
5.3k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 4.1 years ago by
Michael Lawrence
★ 11k • written 4.1 years ago by
Søren
• 0
4
votes
5
replies
7.5k
views
Convert an R data.frame to a bed file in R
rtracklayer
R
bed
updated 2.0 years ago by
Walters
• 0 • written 2.5 years ago by
L
▴ 50
50 results • Page
1 of 1
Recent ...
Replies
Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene
by
Michael Love
43k
See swish vignette, these are explained.
Comment: Problems with oarfish + tximport + swish
by
Michael Love
43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish
by
brown.annaleigh
• 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal
by
iqratechnology4
• 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
by
James W. MacDonald
67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
Bob
▴ 10
Popular Question
to
shepherl
4.1k
Scholar
to
James W. MacDonald
67k
Popular Question
to
Assa Yeroslaviz
★ 1.5k
Locations
• All
The city by the bay,
just now
United Kingdom,
29 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
United States,
2 hours ago
United States,
4 hours ago
Traffic: 419 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6