Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ruv
•
reset
1
vote
2
replies
1.3k
views
RUV4 for microarrays
RUV4
RUV
Microarray
2.9 years ago
Antonio
• 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.6k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 3.9 years ago by
hermidalc
▴ 20 • written 4.6 years ago by
raf4
▴ 20
0
votes
3
replies
920
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.1 years ago by
tmms
• 0 • written 4.1 years ago by
f_pardow
• 0
0
votes
1
reply
1.1k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
r.tom
• 0
0
votes
0
replies
875
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.6 years ago
peter.fransquet
• 0
0
votes
0
replies
865
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
5.9 years ago
RC
• 0
0
votes
0
replies
884
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
5.9 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.6 years ago by
davide risso
▴ 950 • written 6.6 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
892
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
6.8 years ago
manish20072013
• 0
3
votes
4
replies
3.1k
views
Single cells batch effects
RUV
single cell
batch effect
7.0 years ago
ribioinfo
▴ 100
0
votes
0
replies
975
views
Has anyone used the RUV package for Microbiome data?
ruv
7.1 years ago
sasha
• 0
0
votes
1
reply
2.2k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.2 years ago by
davide risso
▴ 950 • written 7.2 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.3 years ago
carleshf
▴ 10
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.7 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.2k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
8.7 years ago • updated 8.6 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv
microarray
updated 8.7 years ago by
gthm
▴ 30 • written 8.9 years ago by
Pauly Lin
▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 8.9 years ago by
davide risso
▴ 950 • written 8.9 years ago by
Pauly Lin
▴ 150
1
vote
9
replies
2.5k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
8.9 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
1 hour ago
United States,
1 hour ago
Ghana/KNUST,
2 hours ago
Mexico,
2 hours ago
Canada,
3 hours ago
Traffic: 447 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6