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ruv
•
reset
1
vote
2
replies
1.3k
views
RUV4 for microarrays
RUV4
RUV
Microarray
3.0 years ago
Antonio
• 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
karissa.barthelson
▴ 20
0
votes
3
replies
948
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.2 years ago by
tmms
• 0 • written 4.2 years ago by
f_pardow
• 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
r.tom
• 0
0
votes
1
reply
1.6k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.0 years ago by
hermidalc
▴ 20 • written 4.7 years ago by
raf4
▴ 20
0
votes
0
replies
895
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.7 years ago
peter.fransquet
• 0
0
votes
0
replies
885
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.0 years ago
RC
• 0
0
votes
0
replies
903
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.0 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.7 years ago by
davide risso
▴ 950 • written 6.7 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.7 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
908
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
6.8 years ago
manish20072013
• 0
3
votes
4
replies
3.1k
views
Single cells batch effects
RUV
single cell
batch effect
7.1 years ago
ribioinfo
▴ 100
0
votes
0
replies
986
views
Has anyone used the RUV package for Microbiome data?
ruv
7.1 years ago
sasha
• 0
0
votes
1
reply
2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.2 years ago by
davide risso
▴ 950 • written 7.3 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.3 years ago
carleshf
▴ 10
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.8 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.2k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
8.8 years ago • updated 8.7 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv
microarray
updated 8.8 years ago by
gthm
▴ 30 • written 8.9 years ago by
Pauly Lin
▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 9.0 years ago by
davide risso
▴ 950 • written 9.0 years ago by
Pauly Lin
▴ 150
1
vote
9
replies
2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.0 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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Michael Love
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shepherl
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