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ruvg
•
reset
4
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5
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2.6k
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Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
g.atla
▴ 10
4
votes
16
replies
7.2k
views
Normalised counts from RUVg in RUVSeq
RUVg
ruvseq
rnaseq
updated 6 days ago by
Shaimaa Gamal
• 0 • written 8.9 years ago by
Pauly Lin
▴ 150
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.7 years ago
anthonycolombo60
• 0
0
votes
3
replies
1.8k
views
RUVg weights in DESeq2
deseq2
ruvg
8.6 years ago
jordan.ramilowski
• 0
0
votes
1
reply
1.4k
views
Different Expression Analysis with EDASeq,DESeq2,edgeR,RUVSeq
deseq2
normalization
RUVg
edger
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
Yang WY
• 0
0
votes
1
reply
2.2k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.2 years ago by
davide risso
▴ 950 • written 7.2 years ago by
weiwsmiling
• 0
0
votes
0
replies
743
views
removing confounding batch efffect with RUVg
RUVg
RNAseq
batch effect
5.0 years ago
gtechbio
▴ 10
7 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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