Showing : ruvnormalize • reset
0
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261
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
2.9 years ago losik • 0
0
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2
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484
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 3.7 years ago by ★ 1.5k • written 3.7 years ago by • 0
2
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9
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1.5k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 4.1 years ago by ▴ 870 • written 4.1 years ago by ▴ 70
1
vote
3
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1.2k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
4.2 years ago • updated 4.1 years ago Nik Tuzov ▴ 70
2
votes
1
reply
767
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 4.3 years ago by ▴ 870 • written 4.3 years ago by • 0
2
votes
1
reply
843
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
5.2 years ago anthonycolombo60 • 0
2
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6
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840
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
5.4 years ago thomas.wolfe • 0
0
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0
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831
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
5.8 years ago thomas.wolfe • 0
1
vote
1
reply
766
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 6.2 years ago by ▴ 10 • written 6.3 years ago by ▴ 110
2
votes
1
reply
798
views
naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 6.2 years ago by ▴ 10 • written 6.3 years ago by ★ 1.5k
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Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
Answer: Unable to install Bioconductor packages by shepherl 2.8k
This normally occurs when R was installed with a different account or an admin account. Unless on this account you won't be able to update…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
Answer: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, At this moment (9:30am CET) I can't reproduce this error with the current release version of the package. I have executed the follow…
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Comment: Extracting normalized counts in MEDIPS
Comment: "full model matrix is less than full rank"
A: Extracting normalized counts in MEDIPS
Answer: "full model matrix is less than full rank"
Comment: Unique GPos taking into account mcols
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