Showing : ruvnormalize • reset
0
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4
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
8 weeks ago • updated 7 weeks ago Mohamed • 0
0
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1
reply
344
views
Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
3.8 years ago losik • 0
0
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2
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574
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 4.6 years ago by ★ 1.5k • written 4.6 years ago by • 0
2
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9
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1.7k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 5.0 years ago by ▴ 890 • written 5.0 years ago by ▴ 70
1
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3
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1.5k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
5.0 years ago Nik Tuzov ▴ 70
2
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1
reply
927
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 5.2 years ago by ▴ 890 • written 5.2 years ago by • 0
2
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1
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1.0k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
6.1 years ago anthonycolombo60 • 0
2
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6
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966
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
6.3 years ago thomas.wolfe • 0
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0
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943
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
6.7 years ago thomas.wolfe • 0
1
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1
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890
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 7.1 years ago by ▴ 10 • written 7.2 years ago by ▴ 110
2
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1
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926
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 7.1 years ago by ▴ 10 • written 7.2 years ago by ★ 1.5k
11 results • Page 1 of 1
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Answer: mapToAlignments_issue by Hervé Pagès 15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution by James W. MacDonald 60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric by Eddie • 0
Worked well under pROC. Thank you
Comment: errors in annotation by James W. MacDonald 60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
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Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
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A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
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