Biostar Ruvnormalize

Showing : ruvnormalize • reset

votes

replies

404

views

RUVnormalize R edgeR RUVSeq RUVnormalizeData

5 months ago Mohamed • 0

votes

386

views

RUVnormalize protein mi

4.1 years ago losik • 0

votes

replies

616

views

RUVnormalize limma corrected expression matrix microarray

updated 4.9 years ago by Dario Strbenac ★ 1.5k • written 4.9 years ago by massimo.acquaviva.78 • 0

votes

replies

1.8k

views

ruv ruvseq ruvnormalize single-cell zero-inflated

updated 5.3 years ago by davide risso ▴ 920 • written 5.3 years ago by Nik Tuzov ▴ 80

vote

replies

1.6k

views

RUV ruvseq ruvr ruvnormalize single cell

5.3 years ago Nik Tuzov ▴ 80

votes

977

views

edger ruvseq rnaseq normalization ruvnormalize

updated 5.5 years ago by davide risso ▴ 920 • written 5.5 years ago by manish20072013 • 0

votes

1.1k

views

ruvseq RUV ruvnormalize ruvg

6.4 years ago anthonycolombo60 • 0

votes

replies

1.0k

views

normalization ruvseq ruvnormalize ruvs eda

6.6 years ago thomas.wolfe • 0

votes

replies

989

views

rnaseq ruvnormalize normalization technical replicates

7.0 years ago thomas.wolfe • 0

vote

950

views

ruvnormalize microarray normalization

updated 7.4 years ago by laurent.jacob ▴ 10 • written 7.5 years ago by Cornwell, Adam ▴ 110

votes

962

views

RUVNormalize Subsetting

updated 7.4 years ago by laurent.jacob ▴ 10 • written 7.5 years ago by Dario Strbenac ★ 1.5k

11 results • Page 1 of 1

Recent ...

Replies

Comment: checkFullRank(modelMatrix) while neither factor can be predicted from each other by swbarnes2 ★ 1.2k

Mother 3 might be breaking the whole thing...try omitting her and see if it will run. You might still have issues with certain mothers bei…

Comment: Rlog performed on tpm or raw transcript abundances? by swbarnes2 ★ 1.2k

Abundance. If you look at the counts in dds, they should match abundance, not TPM (unless there is a slight shift due to the transcript-le…

Comment: Setting up contrasts within a dataset within conditions (across different genoty by nrama • 0

Thanks very much! I'll give that a try.

Answer: question about removing both known and unknown confounders by Michael Love 38k

If my understanding of RUV is correct, I think you should do a LRT in the first DESeq() run (the one that defines `not.sig`). I would use t…

Answer: checkFullRank(modelMatrix) while neither factor can be predicted from each other by Michael Love 38k

I'd recommend working with a local statistician or someone familiar with linear models in R to choose a design and help with interpretation…

Votes

Comment: SV4Vectors DataFrame bug with haven_labelled data

A: ntop parameter in plotPCA(). DESeq2

Comment: ntop parameter in plotPCA(). DESeq2

Answer: Extracting specific comparisons after fitting model in EdgeR

edgeR DEG glmQLFTest

Awards • All