Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ruvnormalize
•
reset
1
vote
0
replies
238
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
3 months ago
Erdi
▴ 10
0
votes
0
replies
233
views
determine k during RUVSeq
RUVSeq
RUVnormalize
4 months ago
Ειρήνη
• 0
1
vote
2
replies
1.1k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
18 months ago
AZ
▴ 30
0
votes
4
replies
2.6k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.3 years ago
Mohamed
▴ 30
0
votes
1
reply
709
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
6.0 years ago
losik
• 0
0
votes
2
replies
1.2k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.8 years ago by
Dario Strbenac
★ 1.5k • written 6.8 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.8k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.2 years ago by
davide risso
▴ 980 • written 7.2 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.6k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.2 years ago
Nik Tuzov
▴ 80
2
votes
1
reply
1.4k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.3 years ago by
davide risso
▴ 980 • written 7.3 years ago by
manish20072013
• 0
2
votes
1
reply
1.7k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.3 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.7k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.5 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.4k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.8 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.4k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.3 years ago by
laurent.jacob
▴ 10 • written 9.3 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.3k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.3 years ago by
laurent.jacob
▴ 10 • written 9.4 years ago by
Dario Strbenac
★ 1.5k
14 results • Page
1 of 1
Recent ...
Replies
Answer: How to subset voomLmFit (MArrayLM) object?
by
Gordon Smyth
51k
Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…
Answer: Need help interpreting heatmaps from limma
by
James W. MacDonald
67k
Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …
Comment: Are transformed values from rlog /vst log2 normalized counts?
by
Eva
▴ 10
I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
Answer: featureCounts fails to load annotation file
by
James W. MacDonald
67k
I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
67k
That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
Votes
Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
Awards
• All
Scholar
to
James W. MacDonald
67k
Popular Question
to
Dorien
▴ 10
Popular Question
to
boczniak767
▴ 740
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
Hervé Pagès
16k
Locations
• All
United States,
18 minutes ago
Australia,
57 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
SA,
1 hour ago
United States,
2 hours ago
Traffic: 305 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6