Bioconductor Ruvnormalize

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DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression

7 months ago AZ ▴ 30

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1.7k

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RUVnormalize R edgeR RUVSeq RUVnormalizeData

17 months ago Mohamed ▴ 20

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536

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RUVnormalize protein mi

5.1 years ago losik • 0

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865

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RUVnormalize limma corrected expression matrix microarray

updated 5.9 years ago by Dario Strbenac ★ 1.5k • written 5.9 years ago by massimo.acquaviva.78 • 0

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2.3k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 6.3 years ago by davide risso ▴ 930 • written 6.3 years ago by Nik Tuzov ▴ 80

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2.0k

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RUV ruvseq ruvr ruvnormalize single cell

6.3 years ago Nik Tuzov ▴ 80

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1.2k

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edger ruvseq rnaseq normalization ruvnormalize

updated 6.4 years ago by davide risso ▴ 930 • written 6.4 years ago by manish20072013 • 0

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1.4k

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ruvseq RUV ruvnormalize ruvg

7.4 years ago anthonycolombo60 • 0

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1.3k

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normalization ruvseq ruvnormalize ruvs eda

7.6 years ago thomas.wolfe • 0

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1.2k

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rnaseq ruvnormalize normalization technical replicates

8.0 years ago thomas.wolfe • 0

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1.2k

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ruvnormalize microarray normalization

updated 8.4 years ago by laurent.jacob ▴ 10 • written 8.5 years ago by Cornwell, Adam ▴ 110

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1.1k

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RUVNormalize Subsetting

updated 8.4 years ago by laurent.jacob ▴ 10 • written 8.5 years ago by Dario Strbenac ★ 1.5k

12 results • Page 1 of 1

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Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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