Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ruvnormalize
•
reset
0
votes
4
replies
223
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
8 weeks ago • updated 7 weeks ago
Mohamed
• 0
0
votes
1
reply
344
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
3.8 years ago
losik
• 0
0
votes
2
replies
574
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 4.6 years ago by
Dario Strbenac
★ 1.5k • written 4.6 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
1.7k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 5.0 years ago by
davide risso
▴ 890 • written 5.0 years ago by
Nik Tuzov
▴ 70
1
vote
3
replies
1.5k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
5.0 years ago
Nik Tuzov
▴ 70
2
votes
1
reply
927
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 5.2 years ago by
davide risso
▴ 890 • written 5.2 years ago by
manish20072013
• 0
2
votes
1
reply
1.0k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
6.1 years ago
anthonycolombo60
• 0
2
votes
6
replies
966
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
6.3 years ago
thomas.wolfe
• 0
0
votes
0
replies
943
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
6.7 years ago
thomas.wolfe
• 0
1
vote
1
reply
890
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 7.1 years ago by
laurent.jacob
▴ 10 • written 7.2 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
926
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 7.1 years ago by
laurent.jacob
▴ 10 • written 7.2 years ago by
Dario Strbenac
★ 1.5k
11 results • Page
1 of 1
Recent ...
Replies
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Comment: errors in annotation
by
James W. MacDonald
60k
If you go to NCBI and the data appear to be correct, then they have evidently already fixed the errors you have found. The data we download…
Comment: How should I set my eps value in cluster profiler?
by
Guido Hooiveld
★ 3.3k
Under the hood `clusterProfiler` makes use of a (fast) GSEA algorithm implemented in the package `fgsea` (function `fgseaMultilevel`). The …
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
Awards
• All
Popular Question
to
Gordon Smyth
46k
Popular Question
to
gv
▴ 40
Scholar
to
Hervé Pagès
15k
Popular Question
to
ta_awwad
▴ 10
Scholar
to
k.vitting.seerup
▴ 120
Locations
• All
Turkey,
1 minute ago
WEHI, Melbourne, Australia,
7 minutes ago
United States,
1 hour ago
United States,
2 hours ago
The city by the bay,
2 hours ago
Traffic: 307 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6