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ruvr
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Number of co-variables k in RUVSeq (RUVr)
rnaseq
ruvseq
RUVr
edgeR
8.0 years ago
David R
▴ 70
1
vote
3
replies
2.0k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.4 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
728
views
Incorporating factors of unwanted variation from RUVr into EdgeR cell means model for DE
edger
RUVseq
RUVr
GLM
RNAseq
4.5 years ago
garbuzov
• 0
3 results • Page
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Comment: Normalised counts from RUVg in RUVSeq
by
Shaimaa Gamal
• 0
Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
Comment: enrichGOgradient color change
by
James W. MacDonald
64k
You could look at my answer and extrapolate from there.
Comment: enrichGOgradient color change
by
WU
• 0
I would like to ask how to make the counts legend black. Thank you.
Answer: Problems with FLOWAI
by
Alexander
• 0
Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…
Answer: Asses fit of variance prior
by
Gordon Smyth
49k
> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…
Votes
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
How to know if I should use voomWithQualityWeights() or not?
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