Bioconductor S4

Showing : s4 • reset

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994

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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830

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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787

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.8k • written 4.1 years ago by muad.abdelhay ▴ 10

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650

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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979

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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722

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S4 deseq2

updated 5.2 years ago by swbarnes2 ★ 1.3k • written 5.2 years ago by shintzen • 0

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1.0k

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s4 methods SummarizedExperiment

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by brendan.innes ▴ 20

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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988

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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1.7k

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rnbeads error as.vector(data) s4vectors s4

8.6 years ago schasse • 0

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5.1k

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updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by Koen Van den Berge ▴ 180

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2.6k

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lumi S4

9.1 years ago Chi Hong • 0

17 results • Page 1 of 1

Recent ...

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0

As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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