Showing : s4vectors • reset
0
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15
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2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
updated 5.7 years ago by ▴ 10 • written 5.7 years ago by • 0
1
vote
2
replies
3.3k
views
Error in installation S4Vectors package
s4vectors
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by • 0
0
votes
4
replies
1.6k
views
‘parallel_slot_names’ is not exported by 'namespace:S4Vectors'
S4Vectors
updated 3.3 years ago by 16k • written 3.3 years ago by • 0
0
votes
6
replies
1.8k
views
Problem installing S4Vectors on Mac Mini M1 Big Sur
S4Vectors
2.5 years ago Richard • 0
5
votes
3
replies
3.7k
views
Add new columns to DESeqResults from text file by matching rownames.
deseq2 deseq merge data frames cbind s4vectors
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
10
votes
10
replies
2.4k
views
Does package S4Vectors break ifelse?
S4Vectors ifelse
updated 6.8 years ago by ▴ 40 • written 8.7 years ago by ★ 3.0k
11
votes
17
replies
2.2k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 16 months ago by ▴ 20 • written 16 months ago by ▴ 30
1
vote
4
replies
2.5k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
5
votes
2
replies
901
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.0 years ago by ★ 11k • written 5.0 years ago by 1.6k
0
votes
7
replies
3.2k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
4.5 years ago james.dalgleish ▴ 30
4
votes
10
replies
2.2k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 70
1
vote
7
replies
2.2k
views
What to do when all the installation methods for a package fail (pagoo)?
S4Vectors pagoo
22 months ago MauriAndres • 0
3
votes
12
replies
2.0k
views
S4Vectors and subectHits error
s4vectors copywriter
updated 6.0 years ago by ★ 11k • written 6.0 years ago by ▴ 200
0
votes
1
reply
947
views
DataFrame showAsCell function
s4vectors
updated 7.5 years ago by ★ 11k • written 7.6 years ago by • 0
5
votes
5
replies
1.4k
views
How to extract out wanted IntegerList more elegantly from nested list?
r s4vectors integerlist iranges
updated 7.5 years ago by ★ 11k • written 7.5 years ago by • 0
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package s4vectors
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
3
votes
8
replies
2.5k
views
S4Vectors masks/breaks regular Matrix functions
S4Vectors Matrix
7.2 years ago peter.kharchenko ▴ 30
1
vote
1
reply
946
views
Bug report: unpredictable coloumn ranaming in DataFrame class
S4Vectors
updated 7.0 years ago by ★ 11k • written 7.0 years ago by • 0
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
4
votes
6
replies
1.5k
views
breakTies for a Hits-object based on value in mcols?
s4vectors hits
updated 6.3 years ago by ★ 11k • written 6.3 years ago by ▴ 170
2
votes
1
reply
875
views
Adding a column to a class that contains DataFrame
s4vectors
6.3 years ago Michael Love 41k
0
votes
1
reply
3.2k
views
problem in loading Deseq2
deseq2 S4Vectors
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
2
votes
2
replies
2.0k
views
Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
updated 5.3 years ago by ★ 28k • written 5.3 years ago by • 0
0
votes
4
replies
1.7k
views
Unexpected behaviour of set operations on GRanges objects when dplyr is loaded
GenomicRanges S4Vectors dplyr
updated 5.3 years ago by 65k • written 5.3 years ago by ▴ 140
0
votes
2
replies
1.2k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.3 years ago by 16k • written 5.3 years ago by • 0
5
votes
10
replies
2.1k
views
caught segfault error when loading S4Vectors package in R
R S4Vectors segfault
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
3
votes
12
replies
2.5k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
5.1 years ago sergi.picart ▴ 20
2
votes
3
replies
1.5k
views
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
GenomicRanges rtracklayer VariantAnnotation S4Vectors SummarizedExperiment
updated 4.8 years ago by ★ 13k • written 4.8 years ago by ▴ 30
1
vote
3
replies
1.6k
views
Correct way to split and unsplit a DataFrame
s4vectors iranges
updated 4.7 years ago by ★ 11k • written 4.7 years ago by ▴ 90
0
votes
2
replies
512
views
Using dplyr commands with DataFrame objects
S4Vectors
6 months ago GE • 0
1
vote
11
replies
1.7k
views
Error uploading deseq2
deseq2 S4Vectors
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
1
vote
2
replies
1.4k
views
Error running table() on an RleList returned by coverage()
GenomicRanges S4Vectors
updated 9.5 years ago by 16k • written 9.5 years ago by ★ 5.1k
1
vote
4
replies
1.7k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 10
0
votes
1
reply
1.9k
views
How to install S4Vector package in R v 3.1.1?
s4vectors R 3.1.1
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 30
0
votes
1
reply
1.7k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.6 years ago schasse • 0
0
votes
1
reply
1.4k
views
simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq easyrnaseq s4vectors
updated 8.4 years ago by ▴ 320 • written 8.4 years ago by • 0
1
vote
1
reply
5.1k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 8.2 years ago by ★ 6.5k • written 8.2 years ago by • 0
2
votes
3
replies
1.5k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage s4vectors seqlengths
8.2 years ago liz.ingsimmons ▴ 140
2
votes
2
replies
2.1k
views
Problem when installing DESeq on MAC OS X
s4vectors mac os x deseq
updated 8.2 years ago by ★ 13k • written 8.2 years ago by • 0
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 7.9 years ago by ▴ 420 • written 8.1 years ago by ▴ 140
3
votes
5
replies
1.7k
views
How can I coerce "list" to S4 "List" (reproducible example is available)?
coercion data manipulation s4vectors List
7.8 years ago Jurat Shahidin ▴ 80
2
votes
1
reply
921
views
Question about parallel manipulation on CharacterList objects
s4vectors IRanges
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 450
3
votes
2
replies
2.5k
views
Convert DataFrame to data.frame While Keeping Column Name Syntax
S4Vectors
updated 2.9 years ago by 65k • written 2.9 years ago by ★ 1.5k
4
votes
4
replies
1.1k
views
S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 11 months ago by ▴ 90
2
votes
3
replies
909
views
S4Vectors, strange metadata behavior
GRangesList S4Vectors
updated 2.4 years ago by 16k • written 2.4 years ago by ▴ 80
2
votes
1
reply
844
views
DataFrame or DFrame
S4Vectors
updated 2.9 years ago by 690 • written 2.9 years ago by ★ 1.5k
0
votes
3
replies
1.3k
views
How can i fix this problem in R
S4Vectors DESeq2
updated 21 months ago by ★ 4.0k • written 21 months ago by • 0
2
votes
1
reply
254
views
DataFrame Printing User Control
S4Vectors
updated 4 months ago by 16k • written 4 months ago by ★ 1.5k
5
votes
6
replies
616
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 6 months ago by 16k • written 6 months ago by ★ 1.5k
3
votes
2
replies
1.6k
views
Proper way to read in a DataFrame with CharacterList columns that was saved to a text file
s4vectors genomicranges
updated 7.8 years ago by ★ 11k • written 7.8 years ago by ★ 1.0k
50 results • Page 1 of 1
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Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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