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s4vectors
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S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 11 months ago by
Michael Steinbaugh
▴ 90
2
votes
1
reply
240
views
DataFrame Printing User Control
S4Vectors
updated 4 months ago by
Hervé Pagès
16k • written 4 months ago by
Dario Strbenac
★ 1.5k
5
votes
6
replies
578
views
DataFrame Construction With Non-standard Column
S4Vectors
updated 6 months ago by
Hervé Pagès
16k • written 6 months ago by
Dario Strbenac
★ 1.5k
0
votes
2
replies
465
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Using dplyr commands with DataFrame objects
S4Vectors
5 months ago
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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