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s4vectors
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S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconductor 3.17
S4Vectors
written 11 months ago by
Michael Steinbaugh
▴ 90
2
votes
1
reply
241
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DataFrame Printing User Control
S4Vectors
updated 4 months ago by
Hervé Pagès
16k • written 4 months ago by
Dario Strbenac
★ 1.5k
5
votes
6
replies
579
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DataFrame Construction With Non-standard Column
S4Vectors
updated 6 months ago by
Hervé Pagès
16k • written 6 months ago by
Dario Strbenac
★ 1.5k
0
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2
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466
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Using dplyr commands with DataFrame objects
S4Vectors
5 months ago
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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